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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc01712 and SMc01711 are separated by 626 nucleotides
SMc01711 and SMc01710 are separated by 118 nucleotides
SMc01710 and SMc01709 overlap by 209 nucleotides
SMc01709 and SMc01708 are separated by 662 nucleotides
SMc01712: SMc01712 - L-lactate dehydrogenase (cytochrome) protein, at 491,966 to 493,177
SMc01712
SMc01711: SMc01711 - hypothetical protein, at 493,804 to 496,527
SMc01711
SMc01710: SMc01710 - hypothetical protein, at 496,646 to 501,478
SMc01710
SMc01709: SMc01709 - signal peptide protein, at 501,270 to 501,773
SMc01709
SMc01708: SMc01708 - hypothetical protein, at 502,436 to 506,311
SMc01708
Group
Condition
SMc01712
SMc01711
SMc01710
SMc01709
SMc01708
carbon source
L-Fucose (C)
-0.5
-0.1
-0.1
-0.6
-0.2
carbon source
pipercolic (C)
-0.2
-0.1
-0.0
-1.1
-0.0
carbon source
L-Lactate (C)
-1.4
+0.0
+0.1
-0.1
-0.0
carbon source
L-Alanine (C)
-0.1
+0.1
+0.0
-1.2
-0.1
carbon source
D-Maltose (C)
+0.1
+0.0
-0.0
-1.1
-0.1
carbon source
D-Glucose (C)
-0.1
-0.0
-0.2
-0.8
-0.0
stress
Nickel (II) chloride 1 mM
+0.0
-0.0
+0.1
-1.0
-0.3
carbon source
NAG (C)
+0.1
+0.1
-0.0
-1.3
+0.0
r2a control
R2A control for volatile experiments
-0.2
-0.0
-0.1
-0.8
-0.0
carbon source
D-Glucose (C)
+0.2
-0.0
-0.2
-1.0
-0.1
nitrogen source
Gly-DL-Asp (N)
-0.1
-0.1
+0.0
-1.0
+0.1
stress
Paraquat dichloride 0.2 mg/ml
-0.1
-0.2
+0.2
-0.8
-0.2
dmso control
DMSO control
-0.3
+0.1
+0.0
-0.8
-0.0
carbon source
D-Ribose (C)
-0.1
-0.0
-0.0
-1.0
+0.1
lb
LB
-0.0
-0.1
-0.1
-0.8
+0.1
carbon source
D-Trehalose (C)
+0.0
+0.1
-0.0
-1.0
-0.0
stress
perchlorate 10 mM
+0.3
-0.1
+0.0
-1.1
+0.0
carbon source
D-Xylose (C)
+0.1
+0.0
-0.0
-0.8
-0.1
carbon source
acetate (C)
+0.2
+0.1
-0.2
-0.7
-0.1
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.1
-0.1
-0.1
-0.7
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.0
+0.2
-0.1
-0.6
-0.2
stress
Fusidic 0.0001 mg/ml
+0.3
-0.0
+0.0
-0.9
+0.0
carbon source
D-Ribose (C)
+0.3
-0.0
-0.1
-0.8
+0.1
r2a control
R2A control for volatile experiments
-0.3
+0.1
+0.1
-0.5
+0.1
nitrogen source
NAG (N)
+0.3
-0.3
+0.0
-0.7
+0.1
stress
Chlorite 0.1 mM
+0.2
-0.1
-0.1
-0.7
+0.1
nitrogen source
Uridine (N)
+0.3
+0.1
-0.0
-0.7
-0.0
nitrogen source
L-Arginine (N)
+0.4
+0.1
-0.2
-0.5
+0.0
pH
LB, pH8
+0.4
+0.0
+0.1
-0.7
-0.1
nitrogen source
L-Leucine (N)
+0.5
+0.1
-0.1
-0.2
+0.2
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