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Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc01617 and SMc01618 overlap by 4 nucleotides
SMc01618 and SMc01619 overlap by 4 nucleotides
SMc01619 and SMc01620 are separated by 13 nucleotides
SMc01620 and SMc01621 are separated by 28 nucleotides
SMc01617: SMc01617 - hypothetical protein, at 2,407,430 to 2,408,275
SMc01617
SMc01618: SMc01618 - carbohydrate kinase, at 2,408,272 to 2,409,555
SMc01618
SMc01619: SMc01619 - hypothetical protein, at 2,409,552 to 2,410,607
SMc01619
SMc01620: SMc01620 - glycerol-3-phosphate dehydrogenase, at 2,410,621 to 2,412,135
SMc01620
SMc01621: SMc01621 - L-fuculose phosphate aldolase, at 2,412,164 to 2,412,832
SMc01621
Group
Condition
SMc01617
SMc01618
SMc01619
SMc01620
SMc01621
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
+0.1
-1.9
-0.0
+0.0
carbon source
D-Sorbitol (C)
-0.0
+0.0
-0.3
-0.2
-1.5
nitrogen source
Gelatin (N)
-0.1
+0.0
-0.9
-0.2
-0.5
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.0
-0.0
-1.4
+0.0
-0.2
carbon source
L-Lysine (C)
-0.3
-0.3
-0.3
-0.1
-0.5
carbon source
NAG (C)
-0.1
-0.2
-0.5
-0.2
-0.4
nitrogen source
NAG (N)
-0.1
+0.2
-1.2
-0.2
-0.2
carbon source
D-Ribose (C)
-0.2
-0.1
-0.1
-0.6
-0.5
carbon source
Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
-0.1
+0.1
-0.2
-0.5
-0.5
carbon source
D-Mannitol (C)
-0.2
-0.3
+0.4
-0.4
-0.7
stress
Nickel (II) chloride 1 mM
-0.0
-0.1
-0.8
-0.2
+0.1
carbon source
D-Ribose (C)
-0.2
-0.2
+0.3
-0.5
-0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
+0.2
-0.0
-0.8
-0.4
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.3
-0.1
-0.4
-0.2
-0.6
carbon source
D-Mannitol (C)
-0.3
-0.1
+0.4
-0.3
-0.6
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
+0.2
+0.4
-1.0
-0.1
lb
LB
+0.1
+0.1
-1.2
+0.1
+0.2
tsb
Day4 LB
-0.0
-0.0
+0.3
-0.7
-0.3
stress
Chloride 200 mM
+0.1
-0.0
+0.2
-0.6
-0.5
nitrogen source
L-Arginine (N)
+0.1
-0.3
-0.8
-0.3
+0.7
nitrogen source
L-Leucine (N)
-0.2
+0.1
-0.7
+0.2
+0.3
nitrogen source
L-Asparagine (N)
-0.3
-0.2
-1.0
+0.5
+0.8
stress
Paraquat dichloride 0.2 mg/ml
+0.0
+0.1
-0.9
+0.1
+0.3
nutrient
L-Histidine
+0.1
+0.1
-0.8
-0.1
+0.3
pH
LB, pH6
+0.4
+0.2
-0.5
-0.2
-0.1
nitrogen source
L-Serine (N)
-0.1
+0.1
-0.8
+0.4
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.2
+0.0
+0.9
+0.0
-0.3
r2a control
R2A control for volatile experiments
-0.2
+0.1
+1.0
+0.2
-0.2
stress
Chlorite 0.1 mM
+0.5
+0.1
+0.4
+0.2
-0.1
stress
perchlorate 10 mM
+0.6
+0.2
+0.4
-0.1
+0.1
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