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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc01462 and SMc01463 are separated by 36 nucleotides
SMc01463 and SMc01464 are separated by 122 nucleotides
SMc01464 and SMc01465 are separated by 103 nucleotides
SMc01465 and SMc05008 are separated by 180 nucleotides
SMc01462: SMc01462 - acetyltransferase, at 2,309,473 to 2,309,934
SMc01462
SMc01463: SMc01463 - hypothetical protein, at 2,309,971 to 2,310,681
SMc01463
SMc01464: SMc01464 - hypothetical protein, at 2,310,804 to 2,312,084
SMc01464
SMc01465: SMc01465 - CREA protein, at 2,312,188 to 2,312,685
SMc01465
SMc05008: SMc05008 - signal peptide protein, at 2,312,866 to 2,313,225
SMc05008
Group
Condition
SMc01462
SMc01463
SMc01464
SMc01465
SMc05008
nitrogen source
L-Asparagine (N)
-0.2
-0.1
-0.8
-0.6
-0.1
stress
Thallium(I) acetate 0.0025 mg/ml
-0.6
-0.4
+0.1
-0.0
-0.3
nitrogen source
L-Leucine (N)
+0.2
-0.5
-0.5
-0.4
+0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.0
-0.2
-0.5
-0.5
-0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.4
-0.4
-0.2
-0.2
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.4
+0.3
-0.3
-0.2
-0.3
stress
Cisplatin 0.0005 mg/ml
-0.4
+0.0
+0.5
-0.7
-0.3
r2a control
R2A control for volatile experiments
-0.3
-0.1
-0.7
+0.3
+0.0
stress
Paraquat dichloride 0.2 mg/ml
-0.3
-0.5
+0.2
-0.0
-0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
+0.2
-0.5
-0.3
-0.1
nitrogen source
Cytosine (N)
+0.2
-0.5
+0.2
-0.5
+0.0
nutrient
L-Lysine
+0.4
-0.0
-0.5
-0.3
-0.1
r2a control
R2A control for volatile experiments
-0.3
+0.2
-0.5
+0.2
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
+0.5
-0.8
+0.1
+0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
+0.5
-1.1
+0.1
-0.1
nitrogen source
nitrate (N)
-0.2
-0.2
+0.5
-0.2
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.0
+0.2
+0.4
-0.6
+0.0
nitrogen source
L-Glutamine (N)
-0.1
+0.3
+0.3
-0.4
-0.2
stress
Cisplatin 0.001 mg/ml
-0.2
-0.0
-0.4
+0.4
+0.1
stress
D-Cycloserine 0.05 mg/ml
+0.4
+0.0
-0.1
-0.5
+0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
+0.4
-0.1
-0.5
-0.2
nutrient
L-Lysine
+0.4
-0.4
-0.2
+0.2
-0.0
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
-0.4
+0.3
-0.0
+0.3
+0.1
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.3
+0.4
-0.2
+0.3
+0.0
nitrogen source
Gelatin (N)
+0.5
-0.1
+0.4
-0.2
-0.0
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.3
-0.2
+0.5
-0.1
+0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
+0.6
-0.2
+0.1
+0.4
stress
Nickel (II) chloride 1 mM
+0.1
+0.6
+0.3
-0.1
-0.2
stress
perchlorate 10 mM
+0.3
-0.2
+0.2
+0.3
+0.2
carbon source
L-Arabinose (C)
-0.2
+0.5
-0.0
+0.4
+0.1
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