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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc01453 and SMc01454 are separated by 314 nucleotides
SMc01454 and SMc01455 are separated by 100 nucleotides
SMc01455 and SMc01456 are separated by 443 nucleotides
SMc01456 and SMc01457 are separated by 57 nucleotides
SMc01453: SMc01453 - transposase, at 2,293,220 to 2,294,383
SMc01453
SMc01454: SMc01454 - hypothetical protein, at 2,294,698 to 2,298,402
SMc01454
SMc01455: SMc01455 - D-lactate dehydrogenase (cytochrome) protein, at 2,298,503 to 2,299,909
SMc01455
SMc01456: SMc01456 - hypothetical protein, at 2,300,353 to 2,300,787
SMc01456
SMc01457: SMc01457 - transport transmembrane protein, at 2,300,845 to 2,303,979
SMc01457
Group
Condition
SMc01453
SMc01454
SMc01455
SMc01456
SMc01457
stress
A22 0.02 mg/ml
N.D.
-1.9
-0.4
-0.3
-0.4
nitrogen source
Uridine (N)
N.D.
-0.8
-0.7
-0.5
-0.6
stress
Fusidic 0.0001 mg/ml
N.D.
-1.0
-0.2
+0.1
-1.4
stress
Chlorite 0.1 mM
N.D.
+0.2
-0.2
-0.2
-2.3
carbon source
acetate (C)
N.D.
-2.7
-0.2
+0.4
-0.0
stress
Aluminum chloride
N.D.
-0.8
+0.3
-1.1
-0.8
carbon source
acetate (C)
N.D.
-2.6
+0.1
-0.1
+0.3
stress
Sisomicin 0.004 mg/ml
N.D.
-0.5
-0.1
-0.1
-1.4
stress
Cobalt chloride 0.16 mM
N.D.
-1.2
+0.2
-0.5
-0.7
nitrogen source
nitrate (N)
N.D.
-1.0
-0.5
-0.4
-0.3
pH
LB, pH8
N.D.
-0.2
-0.4
-0.0
-1.4
stress
Polymyxin B sulfate 0.00005 mg/ml
N.D.
-0.6
+0.3
-0.7
-1.1
carbon source
Lactitol (C)
N.D.
-1.6
-0.2
+0.1
-0.2
nitrogen source
Cytosine (N)
N.D.
-0.8
-0.8
-0.2
-0.2
pH
LB, pH8
N.D.
-0.2
-0.1
+0.2
-1.8
carbon source
Lactitol (C)
N.D.
-1.6
-0.0
+0.3
-0.0
stress
Cisplatin 0.0005 mg/ml
N.D.
+0.5
+0.3
-0.3
-1.3
stress
copper (II) chloride 1 mM
N.D.
+0.8
-0.6
+0.1
-0.9
stress
Nickel (II) chloride 1 mM
N.D.
+1.4
+0.4
-0.8
-1.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
+0.4
+0.4
-0.4
-0.6
stress
Paraquat dichloride 0.3 mg/ml
N.D.
+1.1
+0.3
-0.2
-0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
+0.8
+0.8
-0.1
-0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
+0.8
+0.9
-0.1
-0.7
stress
Chloride 200 mM
N.D.
+1.0
+0.5
-0.2
-0.3
stress
Paraquat dichloride 0.2 mg/ml
N.D.
+1.0
+0.8
-0.1
-0.6
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
+0.8
+0.8
-0.1
-0.3
stress
nitrate 40 mM
N.D.
+1.6
+0.2
+0.2
-0.7
stress
perchlorate 10 mM
N.D.
+2.2
+0.9
-0.0
-0.3
pH
LB, pH6
N.D.
+4.1
+0.2
-0.1
-0.1
pH
LB, pH6
N.D.
+3.9
+0.7
-0.1
-0.4
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