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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc01448 and SMc01449 are separated by 114 nucleotides
SMc01449 and SMc01450 are separated by 711 nucleotides
SMc01450 and SMc01451 are separated by 21 nucleotides
SMc01451 and SMc01452 are separated by 82 nucleotides
SMc01448: SMc01448 - hypothetical protein, at 2,290,085 to 2,290,531
SMc01448
SMc01449: SMc01449 - hypothetical protein, at 2,290,646 to 2,290,954
SMc01449
SMc01450: SMc01450 - hypothetical protein, at 2,291,666 to 2,292,181
SMc01450
SMc01451: SMc01451 - hypothetical protein, at 2,292,203 to 2,292,418
SMc01451
SMc01452: SMc01452 - hypothetical protein, at 2,292,501 to 2,292,743
SMc01452
Group
Condition
SMc01448
SMc01449
SMc01450
SMc01451
SMc01452
nitrogen source
L-Histidine (N)
-0.4
-0.9
N.D.
N.D.
+0.0
nitrogen source
nitrate (N)
-0.2
-0.4
N.D.
N.D.
-0.6
stress
D-Cycloserine 0.05 mg/ml
-0.2
-0.6
N.D.
N.D.
-0.3
stress
Paraquat dichloride 0.2 mg/ml
-0.0
-0.6
N.D.
N.D.
-0.5
nitrogen source
L-Serine (N)
-0.2
-0.4
N.D.
N.D.
-0.4
nitrogen source
L-Glutamine (N)
-0.6
-0.5
N.D.
N.D.
+0.1
stress
Chlorite 0.1 mM
+0.1
-0.4
N.D.
N.D.
-0.6
nitrogen source
NAG (N)
-0.2
-0.2
N.D.
N.D.
-0.4
r2a control
R2A control
-0.6
-0.2
N.D.
N.D.
+0.0
carbon source
Lactulose (C)
-0.1
-0.4
N.D.
N.D.
-0.3
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
-0.3
-0.3
N.D.
N.D.
-0.2
nitrogen source
Uridine (N)
-0.4
-0.5
N.D.
N.D.
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.2
-0.3
N.D.
N.D.
-0.6
nitrogen source
Cytosine (N)
+0.5
-0.6
N.D.
N.D.
-0.4
lb
LB
-0.4
-0.2
N.D.
N.D.
+0.3
stress
Nickel (II) chloride 1 mM
+0.4
-0.5
N.D.
N.D.
-0.2
carbon source
Methyl beta-D-glucopyranoside (C)
-0.4
-0.2
N.D.
N.D.
+0.4
nutrient
L-Histidine
-0.5
+0.2
N.D.
N.D.
+0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.4
-0.0
N.D.
N.D.
+0.6
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.2
+0.4
N.D.
N.D.
-0.5
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.1
-0.0
N.D.
N.D.
+0.6
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.5
-0.4
N.D.
N.D.
+0.4
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.2
+0.5
N.D.
N.D.
-0.1
r2a control
R2A control for volatile experiments
+0.4
+0.3
N.D.
N.D.
-0.1
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
+0.5
+0.3
N.D.
N.D.
+0.0
stress
1-octen-3-ol 0.4933903333 mM
+0.3
+0.0
N.D.
N.D.
+0.5
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.2
+0.3
N.D.
N.D.
+0.3
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
+0.7
-0.0
N.D.
N.D.
+0.2
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.5
-0.0
N.D.
N.D.
+0.4
stress
copper (II) chloride 1 mM
+0.5
+0.2
N.D.
N.D.
+0.5
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