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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc01425 and SMc01426 are separated by 585 nucleotides
SMc01426 and SMc01427 are separated by 102 nucleotides
SMc01427 and SMc01428 are separated by 156 nucleotides
SMc01428 and SMc01429 are separated by 310 nucleotides
SMc01425: SMc01425 - hypothetical protein, at 2,270,190 to 2,270,783
SMc01425
SMc01426: SMc01426 - hypothetical protein, at 2,271,369 to 2,272,097
SMc01426
SMc01427: SMc01427 - hypothetical protein, at 2,272,200 to 2,272,424
SMc01427
SMc01428: SMc01428 - cold shock transcription regulator protein, at 2,272,581 to 2,272,790
SMc01428
SMc01429: SMc01429 - oxidoreductase, at 2,273,101 to 2,273,946
SMc01429
Group
Condition
SMc01425
SMc01426
SMc01427
SMc01428
SMc01429
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
-0.6
-2.5
-0.3
-0.1
lb no stress control
LB no stress control
+0.0
+0.1
-2.9
-0.6
+0.1
lb no stress control
LB no stress control
-0.0
-0.1
-3.0
+0.4
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
-0.7
-2.8
+1.0
-0.5
nitrogen source
Cytosine (N)
-0.1
+0.3
-1.4
-1.1
-0.2
nitrogen source
L-Arginine (N)
-0.4
+0.1
-1.7
+0.0
+0.0
stress
6-Pentyl-2H-pyran-2-one 0.4557668333 mM
+0.2
-0.3
-1.5
-0.1
-0.1
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.1
-0.1
-2.0
+0.4
-0.1
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
+0.1
+0.1
-1.2
-0.4
-0.2
carbon source
Lactitol (C)
+0.2
+0.1
-0.2
-1.5
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
+0.5
-1.7
-0.1
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.1
-0.6
-0.9
+0.6
-0.3
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.3
+0.1
-0.5
-1.2
+0.2
stress
6-Pentyl-2H-pyran-2-one 0.4557668333 mM
+0.1
-0.2
+0.4
-1.2
-0.2
r2a control
R2A control for volatile experiments
+0.2
-0.2
-1.3
+0.2
-0.0
stress
Fusidic 0.0001 mg/ml
-0.0
-0.3
+0.6
-1.2
-0.0
carbon source
acetate (C)
+0.2
+0.0
-0.9
+0.7
-0.6
nitrogen source
L-Histidine (N)
-0.1
-0.0
+0.9
-0.3
-0.7
nitrogen source
Uridine (N)
-0.3
-0.4
+0.2
+0.7
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
+0.3
-0.5
+0.7
+0.2
nitrogen source
L-Leucine (N)
-0.1
-0.3
+1.0
+0.7
-0.4
stress
3-octanone 0.456 mM
+0.1
+0.4
+0.9
-0.5
+0.1
stress
copper (II) chloride 1 mM
-0.1
+0.1
+0.8
+1.1
-0.7
pH
LB, pH6
-0.1
-0.4
+0.4
+1.5
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.0
+0.5
-0.5
+1.0
+0.4
pH
LB, pH6
-0.2
-0.1
+1.0
+0.7
+0.0
dmso control
DMSO control
+0.1
+0.3
+1.2
+0.3
-0.2
stress
perchlorate 10 mM
-0.2
+0.1
+0.5
+1.4
-0.1
stress
Chlorite 0.1 mM
-0.4
+0.4
+1.9
+0.5
-0.4
pH
LB, pH8
+0.1
+0.2
+0.8
+0.9
+0.1
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