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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc01422 and SMc01423 overlap by 14 nucleotides
SMc01423 and SMc01424 overlap by 4 nucleotides
SMc01424 and SMc01425 are separated by 67 nucleotides
SMc01425 and SMc01426 are separated by 585 nucleotides
SMc01422: SMc01422 - hypothetical protein, at 2,268,452 to 2,268,838
SMc01422
SMc01423: SMc01423 - nitrile hydratase subunit beta protein, at 2,268,825 to 2,269,484
SMc01423
SMc01424: SMc01424 - nitrile hydratase subunit alpha protein, at 2,269,481 to 2,270,122
SMc01424
SMc01425: SMc01425 - hypothetical protein, at 2,270,190 to 2,270,783
SMc01425
SMc01426: SMc01426 - hypothetical protein, at 2,271,369 to 2,272,097
SMc01426
Group
Condition
SMc01422
SMc01423
SMc01424
SMc01425
SMc01426
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.3
-0.3
-2.3
+0.2
-0.7
nitrogen source
L-Arginine (N)
-0.5
-0.5
-1.0
-0.4
+0.1
stress
Cisplatin 0.0005 mg/ml
+0.2
-0.1
-1.2
-0.2
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.2
-0.1
-0.1
+0.3
-0.3
nitrogen source
nitrate (N)
-0.5
-0.3
-0.2
-0.2
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.4
-0.1
-1.2
+0.2
+0.5
stress
nitrate 40 mM
-0.1
-0.2
-0.8
-0.3
+0.3
carbon source
D-Glucose (C)
+0.0
-0.2
-0.3
+0.1
-0.6
stress
Sisomicin 0.004 mg/ml
-0.3
-0.4
+0.2
-0.0
-0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
-0.2
-0.9
-0.0
+0.5
stress
Chlorite 0.1 mM
+0.4
-0.2
-1.0
-0.4
+0.4
nitrogen source
Uridine (N)
+0.2
-0.4
+0.4
-0.3
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.8
+0.1
+0.1
-0.2
+0.3
nitrogen source
Cytosine (N)
+0.3
-0.5
-0.4
-0.1
+0.3
stress
3-octanone 0.456 mM
-0.1
-0.3
+0.4
+0.0
-0.4
carbon source
D-Trehalose (C)
+0.2
+0.0
-0.7
-0.2
+0.3
carbon source
Mannobiose (C)
-0.1
+0.2
-0.5
-0.1
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
-0.2
+0.3
-0.3
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.8
+0.1
+0.3
-0.0
+0.2
r2a control
R2A control for volatile experiments
-0.0
+0.2
-0.6
+0.3
+0.1
nitrogen source
Gly-DL-Asp (N)
+0.4
-0.2
-0.1
-0.1
+0.3
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.3
-0.4
+0.6
+0.3
+0.1
stress
Nickel (II) chloride 1 mM
+0.3
+0.3
-0.5
-0.0
+0.4
stress
Cisplatin 0.001 mg/ml
-0.2
+0.2
+0.8
-0.3
+0.0
carbon source
Protocatechuic Acid (C)
+0.1
-0.1
+0.6
+0.3
-0.2
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.4
+0.2
+0.9
+0.3
-0.0
stress
Aluminum chloride
-0.0
-0.2
+1.1
-0.1
+0.2
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
+0.3
-0.2
+0.4
+0.3
+0.1
r2a control
R2A control for volatile experiments
-0.1
+0.2
+0.6
+0.2
+0.2
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.1
+0.2
+0.5
+0.3
+0.4
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