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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc01492 and SMc01414 are separated by 233 nucleotides
SMc01414 and SMc01415 are separated by 145 nucleotides
SMc01415 and SMc01416 are separated by 6 nucleotides
SMc01416 and SMc01417 are separated by 74 nucleotides
SMc01492: SMc01492 - hypothetical protein, at 2,261,213 to 2,263,114
SMc01492
SMc01414: SMc01414 - hypothetical protein, at 2,263,348 to 2,264,580
SMc01414
SMc01415: SMc01415 - transmembrane protein, at 2,264,726 to 2,265,814
SMc01415
SMc01416: SMc01416 - hypothetical protein, at 2,265,821 to 2,266,180
SMc01416
SMc01417: SMc01417 - hypothetical protein, at 2,266,255 to 2,266,422
SMc01417
Group
Condition
SMc01492
SMc01414
SMc01415
SMc01416
SMc01417
stress
3-octanone 0.456 mM
-0.1
+0.1
-0.1
N.D.
-2.6
stress
1-octen-3-ol 0.5427293333 mM
+0.1
+0.2
-0.3
N.D.
-2.3
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
-0.0
-0.1
-0.3
N.D.
-1.7
stress
3-octanone 5.310333333 mM
-0.1
-0.2
-0.1
N.D.
-1.7
dmso control
DMSO control
+0.1
-0.1
+0.1
N.D.
-2.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
-0.7
-0.4
N.D.
-0.5
stress
3-octanone 2.655166667 mM
+0.1
-0.1
-0.0
N.D.
-1.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
-0.9
+0.2
N.D.
-0.6
dmso control
DMSO control
-0.0
-0.1
-0.2
N.D.
-0.9
lb no stress control
LB no stress control
-0.1
+0.0
-0.2
N.D.
-0.9
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
+0.0
+0.0
-0.3
N.D.
-0.9
lb no stress control
LB no stress control
+0.0
+0.0
-0.2
N.D.
-1.0
stress
copper (II) chloride 1 mM
-0.2
-0.8
-0.1
N.D.
+0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.0
-0.5
+0.0
N.D.
-0.7
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.0
-0.3
-0.2
N.D.
-0.7
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
-0.1
+0.1
-0.3
N.D.
-0.8
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
+0.1
-0.1
-0.0
N.D.
-0.9
nitrogen source
L-Arginine (N)
-0.2
+0.2
-0.1
N.D.
-0.8
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.1
+0.3
-0.2
N.D.
-0.8
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.1
+0.4
-0.2
N.D.
-0.6
stress
Nickel (II) chloride 1 mM
+0.0
-0.8
+0.0
N.D.
+0.3
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.1
+0.3
+0.1
N.D.
-0.8
nitrogen source
L-Asparagine (N)
-0.3
-0.4
-0.2
N.D.
+0.5
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
+0.2
+0.2
+0.2
N.D.
-0.5
r2a control
R2A control for volatile experiments
+0.2
+0.6
-0.1
N.D.
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.3
-0.8
+0.2
N.D.
+0.8
nitrogen source
L-Histidine (N)
+0.0
-0.7
+0.3
N.D.
+1.0
stress
perchlorate 10 mM
+0.1
-0.1
-0.2
N.D.
+0.8
pH
LB, pH8
+0.0
-0.2
-0.2
N.D.
+1.1
carbon source
Myristic (C)
+0.1
+0.2
+0.3
N.D.
+0.6
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