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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc01118 and SMc01117 are separated by 54 nucleotides
SMc01117 and SMc01116 are separated by 119 nucleotides
SMc01116 and SMc01115 are separated by 49 nucleotides
SMc01115 and SMc01114 are separated by 4 nucleotides
SMc01118: SMc01118 - hypothetical protein, at 437,108 to 437,764
SMc01118
SMc01117: SMc01117 - acetyltransferase, at 437,819 to 438,322
SMc01117
SMc01116: SMc01116 - acyltransferase transmembrane protein, at 438,442 to 439,320
SMc01116
SMc01115: SMc01115 - (dimethylallyl)adenosine tRNA methylthiotransferase, at 439,370 to 440,788
SMc01115
SMc01114: SMc01114 - phoH-like protein, at 440,793 to 441,848
SMc01114
Group
Condition
SMc01118
SMc01117
SMc01116
SMc01115
SMc01114
stress
copper (II) chloride 1 mM
N.D.
N.D.
-1.2
+0.0
-1.2
carbon source
Myristic (C)
N.D.
N.D.
+0.1
+0.2
-1.8
carbon source
D-Trehalose (C)
N.D.
N.D.
-0.4
-0.0
-0.9
stress
copper (II) chloride 1 mM
N.D.
N.D.
-0.7
-0.0
-0.6
carbon source
Maltitol (C)
N.D.
N.D.
-0.7
-0.2
-0.3
stress
A22 0.02 mg/ml
N.D.
N.D.
-0.9
+0.1
-0.3
carbon source
Protocatechuic Acid (C)
N.D.
N.D.
+0.2
-0.0
-0.9
nitrogen source
nitrate (N)
N.D.
N.D.
+0.3
-0.3
-0.7
nitrogen source
Cytosine (N)
N.D.
N.D.
-0.4
+0.2
-0.5
carbon source
Protocatechuic Acid (C)
N.D.
N.D.
+0.5
-0.0
-1.0
carbon source
D-Arabinose (C)
N.D.
N.D.
+0.0
+0.3
-0.8
carbon source
D-Salicin (C)
N.D.
N.D.
+0.2
+0.2
-0.8
nitrogen source
L-Asparagine (N)
N.D.
N.D.
+0.3
-0.2
-0.5
carbon source
Myristic (C)
N.D.
N.D.
+0.4
+0.2
-1.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
N.D.
-0.3
-0.2
+0.6
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
N.D.
-0.5
-0.1
+0.7
stress
Paraquat dichloride 0.3 mg/ml
N.D.
N.D.
+1.0
-0.2
-0.4
stress
perchlorate 10 mM
N.D.
N.D.
+1.0
-0.3
-0.3
lb
LB
N.D.
N.D.
+0.7
-0.3
-0.0
stress
Cisplatin 0.0005 mg/ml
N.D.
N.D.
+1.0
-0.1
-0.5
r2a control
R2A control for volatile experiments
N.D.
N.D.
-0.3
-0.1
+0.8
stress
Paraquat dichloride 0.2 mg/ml
N.D.
N.D.
+0.8
-0.2
-0.2
lb
LB
N.D.
N.D.
+0.8
+0.0
-0.3
lb
LB
N.D.
N.D.
+0.9
-0.2
-0.0
carbon source
L-Malic (C)
N.D.
N.D.
+1.0
-0.1
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
N.D.
+0.0
-0.1
+0.9
stress
D-Cycloserine 0.05 mg/ml
N.D.
N.D.
+1.3
-0.2
-0.0
stress
Aluminum chloride
N.D.
N.D.
+0.5
+0.5
+0.2
stress
Thallium(I) acetate 0.0025 mg/ml
N.D.
N.D.
+1.0
-0.0
+0.2
stress
Chlorite 0.1 mM
N.D.
N.D.
-0.0
+0.3
+1.3
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