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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc01093 and SMc01092 are separated by 157 nucleotides
SMc01092 and SMc01091 are separated by 10 nucleotides
SMc01091 and SMc01090 are separated by 78 nucleotides
SMc01090 and SMc01089 are separated by 152 nucleotides
SMc01093: SMc01093 - esterase, at 465,677 to 466,492
SMc01093
SMc01092: SMc01092 - transcriptional regulator, at 466,650 to 467,540
SMc01092
SMc01091: SMc01091 - hypothetical protein, at 467,551 to 467,694
SMc01091
SMc01090: SMc01090 - ATP-dependent RNA helicase, at 467,773 to 469,665
SMc01090
SMc01089: SMc01089 - hypothetical protein, at 469,818 to 470,204
SMc01089
Group
Condition
SMc01093
SMc01092
SMc01091
SMc01090
SMc01089
r2a control
R2A control for volatile experiments
-0.2
+0.3
-2.5
+0.1
-1.5
stress
Nickel (II) chloride 1 mM
-0.4
-0.1
-1.8
-0.7
-0.5
lb
LB
-0.2
-0.1
-2.7
-0.2
+0.1
stress
3-octanone 2.655166667 mM
-0.9
-0.2
-1.7
-0.1
+0.3
r2a control
R2A control for volatile experiments
-0.7
+0.1
-0.9
-0.3
-0.6
stress
Sisomicin 0.004 mg/ml
-0.8
+0.1
-0.6
-0.6
-0.6
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.3
+0.2
-1.7
+0.1
-0.5
carbon source
D-Mannitol (C)
+0.2
+0.0
-0.5
-0.0
-1.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
-0.1
-1.3
+0.4
-0.5
nitrogen source
Cytosine (N)
+0.5
-0.1
+1.2
+0.3
-3.4
carbon source
L-Lysine (C)
+0.1
-0.1
-1.7
-0.1
+0.6
stress
Cisplatin 0.0005 mg/ml
-0.6
-0.0
-0.7
-0.3
+0.8
r2a control
R2A control
-0.1
-0.2
+0.9
-0.4
-1.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.6
+0.3
-0.0
-0.2
-1.3
pH
LB, pH6
+1.8
+0.1
-1.0
-0.5
-1.0
stress
3-octanone 0.456 mM
-0.7
-0.2
-0.4
+0.0
+0.9
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
+0.3
+0.1
+0.6
+0.1
-1.2
stress
Chloride 200 mM
-0.8
-0.0
+0.3
-0.5
+0.8
stress
Cisplatin 0.001 mg/ml
-0.5
+0.2
-0.4
-0.3
+0.9
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.7
-0.1
-1.1
+0.6
+0.0
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.5
+0.2
+0.7
-0.0
-0.9
nitrogen source
nitrate (N)
+0.5
+0.1
+0.9
+0.1
-1.0
pH
LB, pH6
+1.7
-0.4
-0.5
-0.7
+0.4
stress
Aluminum chloride
-0.8
+0.1
+1.5
-0.4
+0.2
stress
perchlorate 10 mM
+1.1
+0.1
+1.0
-0.3
-1.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.8
+0.1
+0.8
+0.3
-0.8
stress
Thallium(I) acetate 0.001 mg/ml
-0.1
-0.0
+0.6
-0.4
+1.2
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.5
+0.1
+2.4
-0.6
+0.3
stress
copper (II) chloride 1 mM
+0.8
-0.2
+0.2
-0.2
+1.1
nitrogen source
L-Asparagine (N)
+0.3
+0.0
+1.6
+0.4
-0.2
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