Fitness for 5 genes in Sinorhizobium meliloti 1021

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500 ntSMc04865 and SMc01038 are separated by 77 nucleotidesSMc01038 and SMc01039 overlap by 13 nucleotidesSMc01039 and SMc01040 overlap by 20 nucleotidesSMc01040 and SMc01041 are separated by 76 nucleotides SMc04865: SMc04865 - hypothetical protein, at 1,564,169 to 1,564,873 SMc04865 SMc01038: SMc01038 - hypothetical protein, at 1,564,951 to 1,565,400 SMc01038 SMc01039: SMc01039 - hypothetical protein, at 1,565,388 to 1,565,885 SMc01039 SMc01040: SMc01040 - bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 1,565,866 to 1,567,170 SMc01040 SMc01041: SMc01041 - NIFR3-like protein, at 1,567,247 to 1,568,275 SMc01041
Group Condition SMc04865 SMc01038 SMc01039 SMc01040 SMc01041
nitrogen source nitrate (N) +0.1 N.D. +0.2 N.D. -5.5
lb no stress control LB no stress control -0.1 N.D. -0.3 N.D. -2.9
nitrogen source NAG (N) -0.0 N.D. +0.1 N.D. -2.9
nitrogen source Uridine (N) -0.0 N.D. -0.4 N.D. -2.2
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 N.D. -2.3 N.D. +0.1
carbon source Maltitol (C) +0.0 N.D. -0.3 N.D. -1.8
carbon source Maltitol (C) -0.1 N.D. -0.6 N.D. -1.4
nitrogen source L-Leucine (N) +0.1 N.D. -1.1 N.D. -1.1
nitrogen source L-Serine (N) +0.1 N.D. -0.2 N.D. -1.9
carbon source L-Arabinose (C) +0.2 N.D. -0.2 N.D. -1.6
r2a-hepes control R2A-HEPES control for volatile experiments +0.0 N.D. -0.7 N.D. -0.9
carbon source acetate (C) +0.2 N.D. +0.4 N.D. -2.1
carbon source methyl-beta-D-xylopyranoside (C) +0.1 N.D. -0.9 N.D. -0.8
nitrogen source D-Glucosamine Hydrochloride (N) +0.0 N.D. +0.2 N.D. -1.7
stress 6-Pentyl-2H-pyran-2-one 0.385649 mM +0.2 N.D. -0.1 N.D. -1.3
carbon source acetate (C) +0.2 N.D. +0.5 N.D. -1.3
carbon source D-Mannose (C) -0.0 N.D. +0.7 N.D. -1.1
carbon source D-Mannitol (C) +0.2 N.D. +0.4 N.D. -1.0
lb LB -0.1 N.D. -0.8 N.D. +0.7
r2a-hepes control R2A-HEPES control for volatile experiments -0.0 N.D. +0.8 N.D. -0.9
carbon source D-Glucose (C) +0.1 N.D. +0.6 N.D. -0.9
stress perchlorate 10 mM -0.1 N.D. -0.9 N.D. +0.8
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 N.D. -0.9 N.D. +0.9
pH LB, pH8 -0.0 N.D. -0.8 N.D. +0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.3 N.D. -1.0 N.D. +0.7
stress nitrate 40 mM +0.1 N.D. -0.6 N.D. +0.8
stress D-Cycloserine 0.05 mg/ml -0.1 N.D. -0.4 N.D. +1.3
stress Polymyxin B sulfate 0.00005 mg/ml +0.2 N.D. -0.6 N.D. +1.4
pH LB, pH8 -0.0 N.D. +0.2 N.D. +1.4
stress Nickel (II) chloride 1 mM +0.1 N.D. -0.0 N.D. +1.8
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