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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc00941 and SMc00942 are separated by 88 nucleotides
SMc00942 and SMc00943 are separated by 354 nucleotides
SMc00943 and SMc00944 are separated by 161 nucleotides
SMc00944 and SMc00945 are separated by 169 nucleotides
SMc00941: SMc00941 - hypothetical protein, at 1,769,334 to 1,769,552
SMc00941
SMc00942: SMc00942 - hypothetical protein, at 1,769,641 to 1,769,883
SMc00942
SMc00943: SMc00943 - TrpR binding protein WrbA, at 1,770,238 to 1,770,837
SMc00943
SMc00944: SMc00944 - hypothetical protein, at 1,770,999 to 1,771,760
SMc00944
SMc00945: SMc00945 - xanthine-guanine phosphoribosyltransferase, at 1,771,930 to 1,772,427
SMc00945
Group
Condition
SMc00941
SMc00942
SMc00943
SMc00944
SMc00945
nitrogen source
Gly-DL-Asp (N)
-1.2
N.D.
+0.1
-1.2
+0.4
nitrogen source
L-Arginine (N)
-2.3
N.D.
+0.1
+0.3
+0.2
stress
Paraquat dichloride 0.2 mg/ml
-1.1
N.D.
-0.2
-0.7
+0.6
carbon source
Lactitol (C)
-1.3
N.D.
-0.2
+0.1
+0.1
carbon source
Beta-Lactose (C)
-0.7
N.D.
+0.2
-0.3
-0.3
nitrogen source
Uridine (N)
-1.1
N.D.
+0.4
-0.2
-0.1
nitrogen source
D-Glucosamine Hydrochloride (N)
-1.2
N.D.
-0.2
+0.1
+0.3
carbon source
Lactitol (C)
-1.5
N.D.
+0.2
+0.3
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.4
N.D.
-0.2
+0.4
+0.6
nutrient
L-Lysine
-0.4
N.D.
-0.0
-0.6
+0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-1.0
N.D.
+0.1
+0.3
+0.3
stress
nitrate 40 mM
-0.7
N.D.
-0.2
+0.2
+0.5
nitrogen source
nitrate (N)
-0.9
N.D.
+0.4
+0.2
+0.1
stress
copper (II) chloride 1 mM
-0.8
N.D.
+0.2
+0.4
-0.0
lb
LB
-0.9
N.D.
+0.5
-0.1
+0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.4
N.D.
+0.3
+0.5
+0.7
nitrogen source
L-Histidine (N)
-0.5
N.D.
+0.6
-0.3
+0.4
stress
Thallium(I) acetate 0.001 mg/ml
-0.4
N.D.
+0.0
-0.2
+0.8
carbon source
Protocatechuic Acid (C)
+0.2
N.D.
-0.6
+0.7
+0.1
stress
Chlorite 0.1 mM
-1.2
N.D.
+0.4
+1.0
+0.3
stress
Cisplatin 0.0005 mg/ml
+0.4
N.D.
+0.0
-0.6
+0.7
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.9
N.D.
-0.2
-0.4
+0.8
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.9
N.D.
+0.1
-0.2
+0.4
carbon source
succinate (C)
+0.8
N.D.
-0.1
+0.3
+0.3
r2a-hepes control
R2A-HEPES control for volatile experiments
+1.2
N.D.
-0.2
+0.4
+0.0
stress
Aluminum chloride
+0.8
N.D.
+0.3
+0.8
-0.5
carbon source
5-Aminovaleric (C)
+1.0
N.D.
-0.0
+0.5
-0.0
stress
perchlorate 10 mM
+0.2
N.D.
+0.3
+0.2
+0.9
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.4
N.D.
+0.1
+0.6
+0.7
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.4
N.D.
+0.2
+0.8
+0.3
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