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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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500 nt
SMc00916 and SMc00915 overlap by 226 nucleotides
SMc00915 and SMc00914 are separated by 87 nucleotides
SMc00914 and SMc00913 are separated by 500 nucleotides
SMc00913 and SMc00912 are separated by 75 nucleotides
SMc00916: SMc00916 - glutathione S-transferase, at 866,620 to 867,363
SMc00916
SMc00915: SMc00915 - hypothetical protein, at 867,138 to 867,329
SMc00915
SMc00914: SMc00914 - oxidoreductase, at 867,417 to 868,634
SMc00914
SMc00913: SMc00913 - chaperonin GroEL, at 869,135 to 870,772
SMc00913
SMc00912: SMc00912 - co-chaperonin GroES, at 870,848 to 871,144
SMc00912
Group
Condition
SMc00916
SMc00915
SMc00914
SMc00913
SMc00912
nitrogen source
L-Asparagine (N)
-1.8
N.D.
-2.8
N.D.
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.0
N.D.
-3.0
N.D.
N.D.
stress
Thallium(I) acetate 0.001 mg/ml
+0.0
N.D.
-3.9
N.D.
N.D.
stress
Chloride 200 mM
-0.1
N.D.
-3.7
N.D.
N.D.
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.2
N.D.
-3.9
N.D.
N.D.
stress
Thallium(I) acetate 0.0025 mg/ml
+0.2
N.D.
-3.7
N.D.
N.D.
stress
Cobalt chloride 0.16 mM
+0.2
N.D.
-3.7
N.D.
N.D.
pH
LB, pH8
+0.0
N.D.
-3.4
N.D.
N.D.
nutrient
Min media with glucose
+0.2
N.D.
-3.4
N.D.
N.D.
stress
Paraquat dichloride 0.2 mg/ml
-0.1
N.D.
-3.1
N.D.
N.D.
stress
Paraquat dichloride 0.3 mg/ml
+0.2
N.D.
-3.3
N.D.
N.D.
pH
LB, pH8
-0.2
N.D.
-2.8
N.D.
N.D.
dmso control
DMSO control
-0.3
N.D.
-2.7
N.D.
N.D.
stress
copper (II) chloride 1 mM
+0.1
N.D.
-3.1
N.D.
N.D.
nutrient
L-Histidine
+0.0
N.D.
-2.9
N.D.
N.D.
stress
Fusidic 0.0001 mg/ml
+0.0
N.D.
-2.9
N.D.
N.D.
dmso control
DMSO control
-0.4
N.D.
-2.4
N.D.
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
N.D.
-3.1
N.D.
N.D.
nutrient
L-Histidine
-0.0
N.D.
-2.8
N.D.
N.D.
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.0
N.D.
-2.7
N.D.
N.D.
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.7
N.D.
-3.3
N.D.
N.D.
carbon source
D-Xylose (C)
+0.0
N.D.
-2.7
N.D.
N.D.
lb
LB
+0.1
N.D.
-2.7
N.D.
N.D.
carbon source
L-Alanine (C)
+0.2
N.D.
-2.7
N.D.
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
N.D.
-2.7
N.D.
N.D.
lb
LB
+0.1
N.D.
-2.6
N.D.
N.D.
stress
Paraquat dichloride 0.05 mg/ml
+0.1
N.D.
-2.5
N.D.
N.D.
stress
nitrate 40 mM
+0.4
N.D.
-2.8
N.D.
N.D.
lb
LB
+0.2
N.D.
-2.5
N.D.
N.D.
dmso control
DMSO control
+0.4
N.D.
-2.2
N.D.
N.D.
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