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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc00905 and SMc00904 are separated by 74 nucleotides
SMc00904 and SMc00902 are separated by 6 nucleotides
SMc00902 and SMc00930 are separated by 72 nucleotides
SMc00930 and SMc00900 are separated by 228 nucleotides
SMc00905: SMc00905 - deaminase, at 878,931 to 879,380
SMc00905
SMc00904: SMc00904 - hypothetical protein, at 879,455 to 881,176
SMc00904
SMc00902: SMc00902 - hypothetical protein, at 881,183 to 881,743
SMc00902
SMc00930: SMc00930 - hypothetical protein, at 881,816 to 882,715
SMc00930
SMc00900: SMc00900 - hypothetical protein, at 882,944 to 883,330
SMc00900
Group
Condition
SMc00905
SMc00904
SMc00902
SMc00930
SMc00900
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
-0.4
N.D.
-0.4
-0.7
nitrogen source
L-Arginine (N)
N.D.
+0.2
N.D.
-1.0
-0.6
dmso control
DMSO control
N.D.
-0.7
N.D.
-0.3
-0.3
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
N.D.
-0.6
N.D.
-0.2
-0.3
pH
LB, pH6
N.D.
-0.4
N.D.
-0.2
-0.4
carbon source
Lactitol (C)
N.D.
-1.0
N.D.
-0.1
+0.1
carbon source
Beta-Lactose (C)
N.D.
-0.6
N.D.
+0.2
-0.4
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
N.D.
-0.8
N.D.
-0.1
+0.2
carbon source
L-Leucine (C)
N.D.
-0.6
N.D.
+0.2
+0.2
nitrogen source
Gelatin (N)
N.D.
+0.8
N.D.
-0.3
-0.3
stress
Paraquat dichloride 0.2 mg/ml
N.D.
+0.8
N.D.
-0.0
-0.5
nutrient
Min media with glucose
N.D.
+0.7
N.D.
+0.0
-0.3
stress
Cisplatin 0.001 mg/ml
N.D.
+0.7
N.D.
-0.3
+0.0
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
N.D.
+0.8
N.D.
-0.1
-0.1
stress
Fusidic 0.0001 mg/ml
N.D.
+0.8
N.D.
-0.3
+0.1
stress
Chloride 200 mM
N.D.
+0.9
N.D.
-0.1
-0.1
nitrogen source
Gly-DL-Asp (N)
N.D.
+0.8
N.D.
+0.1
-0.2
lb
LB
N.D.
+1.0
N.D.
-0.1
-0.1
stress
Cisplatin 0.0005 mg/ml
N.D.
+0.8
N.D.
-0.2
+0.1
nitrogen source
L-Serine (N)
N.D.
+0.9
N.D.
-0.1
+0.1
stress
Thallium(I) acetate 0.0025 mg/ml
N.D.
+0.8
N.D.
-0.2
+0.3
pH
LB, pH8
N.D.
+1.3
N.D.
-0.0
-0.2
stress
Cobalt chloride 0.16 mM
N.D.
+1.3
N.D.
-0.0
-0.2
lb
LB
N.D.
+1.5
N.D.
-0.1
-0.2
carbon source
Myristic (C)
N.D.
+1.3
N.D.
-0.0
-0.0
carbon source
Myristic (C)
N.D.
+1.2
N.D.
-0.1
+0.3
pH
LB, pH8
N.D.
+1.5
N.D.
+0.1
+0.0
lb
LB
N.D.
+1.5
N.D.
-0.0
+0.2
stress
D-Cycloserine 0.05 mg/ml
N.D.
+1.5
N.D.
+0.0
+0.2
stress
perchlorate 10 mM
N.D.
+1.7
N.D.
-0.1
+0.3
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