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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc00790 and SMc00791 are separated by 64 nucleotides
SMc00791 and SMc00792 are separated by 152 nucleotides
SMc00792 and SMc00793 are separated by 101 nucleotides
SMc00793 and SMc00794 are separated by 26 nucleotides
SMc00790: SMc00790 - peptide ABC transporter ATP-binding protein, at 811,962 to 812,789
SMc00790
SMc00791: SMc00791 - hypothetical protein, at 812,854 to 813,198
SMc00791
SMc00792: SMc00792 - hypothetical protein, at 813,351 to 813,521
SMc00792
SMc00793: SMc00793 - permease, at 813,623 to 814,753
SMc00793
SMc00794: SMc00794 - two-component response regulator, at 814,780 to 815,577
SMc00794
Group
Condition
SMc00790
SMc00791
SMc00792
SMc00793
SMc00794
nitrogen source
L-Arginine (N)
+0.4
-3.8
-0.5
-0.7
-0.2
nitrogen source
Gly-DL-Asp (N)
-2.5
-1.0
+0.1
-0.0
+0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
-1.5
-0.3
-0.3
+0.2
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.4
-1.2
-0.6
+0.1
+0.4
nitrogen source
NAG (N)
+0.1
-1.9
+0.2
-0.2
+0.3
carbon source
5-Aminovaleric (C)
-0.1
-1.8
-0.4
-0.0
+1.1
stress
Cisplatin 0.0005 mg/ml
+0.4
-2.0
-0.0
-0.1
+0.6
stress
nitrate 40 mM
+0.5
-0.9
-0.8
-0.3
+0.7
stress
Cisplatin 0.001 mg/ml
+0.3
-0.7
-0.6
-0.2
+0.7
stress
perchlorate 10 mM
+1.2
-1.9
+0.0
-0.1
+0.4
stress
Thallium(I) acetate 0.001 mg/ml
+0.4
-0.4
-0.7
-0.3
+0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.7
+0.5
-0.7
-0.0
-0.6
lb
LB
+0.8
+0.2
-0.5
-0.4
+0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.6
+0.5
-0.8
+0.3
-0.0
carbon source
L-Lysine (C)
-0.1
-0.5
+0.1
-0.2
+1.4
carbon source
L-Lysine (C)
-0.3
+0.2
-0.4
-0.1
+1.3
carbon source
D-Ribose (C)
-0.1
-0.2
+0.5
-0.2
+1.3
nutrient
Min media with glucose
+0.5
+1.0
-0.5
-0.3
+0.8
carbon source
Myristic (C)
+0.1
-1.1
-0.2
-0.0
+2.9
pH
LB, pH6
+1.1
+0.1
-0.3
-0.1
+0.9
pH
LB, pH8
+0.9
+0.7
-0.3
+0.1
+0.5
carbon source
D-Glucosamine Hydrochloride (C)
+0.4
+0.4
+0.1
-0.2
+1.2
carbon source
L-Alanine (C)
+0.1
-1.0
+0.4
+0.1
+2.5
carbon source
pipercolic (C)
-0.4
-0.1
+0.4
-0.2
+2.5
carbon source
pipercolic (C)
-0.4
-0.2
+0.2
-0.0
+2.6
carbon source
NAG (C)
+0.3
+1.0
+0.5
+0.2
+0.3
carbon source
L-Alanine (C)
+0.2
-0.1
-0.2
+0.0
+2.4
carbon source
Myristic (C)
-0.1
-0.4
-0.3
+0.0
+3.1
pH
LB, pH6
+1.1
+0.7
+0.0
-0.2
+0.7
carbon source
Uridine (C)
+0.2
+0.4
+0.3
-0.0
+1.6
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