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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc00762 and SMc00763 are separated by 124 nucleotides
SMc00763 and SMc00764 are separated by 270 nucleotides
SMc00764 and SMc00765 are separated by 329 nucleotides
SMc00765 and SMc00766 are separated by 348 nucleotides
SMc00762: SMc00762 - glutamine synthetase, at 772,228 to 773,664
SMc00762
SMc00763: SMc00763 - hypothetical protein, at 773,789 to 774,973
SMc00763
SMc00764: SMc00764 - hypothetical protein, at 775,244 to 775,384
SMc00764
SMc00765: SMc00765 - methyl-accepting chemotaxis protein, at 775,714 to 778,239
SMc00765
SMc00766: SMc00766 - transcriptional regulator, at 778,588 to 779,463
SMc00766
Group
Condition
SMc00762
SMc00763
SMc00764
SMc00765
SMc00766
stress
Nickel (II) chloride 1 mM
-1.3
-0.0
+0.0
+0.1
-0.3
stress
Sisomicin 0.004 mg/ml
-1.1
-0.1
+0.3
-0.1
-0.3
stress
1-octen-3-ol 0.6030326667 mM
-0.4
+0.4
-1.0
-0.1
-0.2
carbon source
D-Tagatose (C)
-1.3
-0.0
-0.1
+0.2
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.9
-0.3
+0.3
-0.2
-0.1
nitrogen source
L-Asparagine (N)
+0.4
-1.0
-0.2
-0.4
-0.0
tsb
Day4 LB
-0.9
-0.0
-0.3
+0.1
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-1.5
+0.4
-0.1
+0.1
+0.1
carbon source
acetate (C)
-1.2
+0.1
+0.1
+0.1
-0.0
carbon source
L-Arabinose (C)
-1.6
-0.1
+0.2
+0.1
+0.4
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.2
-0.4
-0.5
+0.4
-0.2
stress
6-Pentyl-2H-pyran-2-one 0.4557668333 mM
-0.1
+0.3
-0.8
+0.1
-0.4
carbon source
D-Galactose (C)
-0.9
+0.3
-0.2
+0.1
+0.1
stress
1-octen-3-ol 0.5427293333 mM
-0.1
+0.3
-0.6
+0.1
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.9
-0.6
+0.9
+0.5
-0.5
carbon source
Fumarate (C)
-0.9
+0.1
-0.2
+0.0
+0.4
stress
Cisplatin 0.0005 mg/ml
+0.1
+0.6
-0.6
-0.2
-0.5
stress
copper (II) chloride 1 mM
-0.2
+0.6
-0.2
-0.1
-0.5
stress
Cisplatin 0.001 mg/ml
+0.3
-0.3
+0.3
-0.3
-0.5
stress
Aluminum chloride
-0.1
+0.2
-0.8
+0.1
+0.3
carbon source
L-Arabinose (C)
-0.7
+0.2
+0.3
-0.1
+0.1
carbon source
acetate (C)
-1.1
+0.7
+0.2
+0.0
-0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.3
+0.6
+0.6
-0.1
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.7
+0.1
+0.7
+0.3
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
+1.0
+0.4
-0.6
-0.7
nitrogen source
L-Arginine (N)
+0.5
-0.4
-0.5
-0.1
+0.8
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.4
+0.5
+0.5
+0.1
-0.0
carbon source
L-Leucine (C)
-0.2
+0.5
+0.3
+0.3
-0.1
r2a control
R2A control for volatile experiments
-0.3
+0.6
+0.3
+0.4
+0.0
carbon source
D-Ribose (C)
+0.1
+0.4
+0.4
+0.1
+0.4
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