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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc00761 and SMc00762 are separated by 16 nucleotides
SMc00762 and SMc00763 are separated by 124 nucleotides
SMc00763 and SMc00764 are separated by 270 nucleotides
SMc00764 and SMc00765 are separated by 329 nucleotides
SMc00761: SMc00761 - oxidoreductase, at 770,925 to 772,211
SMc00761
SMc00762: SMc00762 - glutamine synthetase, at 772,228 to 773,664
SMc00762
SMc00763: SMc00763 - hypothetical protein, at 773,789 to 774,973
SMc00763
SMc00764: SMc00764 - hypothetical protein, at 775,244 to 775,384
SMc00764
SMc00765: SMc00765 - methyl-accepting chemotaxis protein, at 775,714 to 778,239
SMc00765
Group
Condition
SMc00761
SMc00762
SMc00763
SMc00764
SMc00765
carbon source
acetate (C)
-1.8
-1.2
+0.1
+0.1
+0.1
carbon source
D-Tagatose (C)
-1.5
-1.3
-0.0
-0.1
+0.2
carbon source
L-Arabinose (C)
-1.3
-1.6
-0.1
+0.2
+0.1
carbon source
Fumarate (C)
-1.5
-0.9
+0.1
-0.2
+0.0
stress
nitrite 20 mM
-2.4
+0.1
-0.1
-0.2
+0.0
carbon source
acetate (C)
-1.9
-1.1
+0.7
+0.2
+0.0
stress
sodium fluoride 100 mM
-1.3
-0.6
+0.4
-0.2
+0.1
carbon source
Myristic (C)
-1.5
-0.4
+0.4
+0.1
-0.1
nitrogen source
L-Asparagine (N)
+0.6
+0.4
-1.0
-0.2
-0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+1.2
-1.5
+0.4
-0.1
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+1.4
-1.3
+0.6
+0.6
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.8
-0.7
+0.1
+0.7
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+1.3
-0.9
-0.6
+0.9
+0.5
stress
Nickel (II) chloride 1 mM
+2.5
-1.3
-0.0
+0.0
+0.1
stress
Sisomicin 0.004 mg/ml
+2.3
-1.1
-0.1
+0.3
-0.1
stress
Aluminum chloride
+1.9
-0.1
+0.2
-0.8
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+1.1
-0.2
+1.0
+0.4
-0.6
stress
Cisplatin 0.0005 mg/ml
+1.8
+0.1
+0.6
-0.6
-0.2
stress
nitrate 40 mM
+1.7
+0.3
+0.4
-0.3
-0.2
stress
Chlorite 0.1 mM
+1.9
+0.0
+0.1
+0.3
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+1.6
-0.4
+0.5
+0.5
+0.1
stress
Cisplatin 0.001 mg/ml
+2.2
+0.3
-0.3
+0.3
-0.3
stress
Paraquat dichloride 0.2 mg/ml
+1.7
+0.3
+0.3
+0.3
-0.2
lb
LB
+2.5
+0.3
-0.1
-0.1
-0.1
stress
perchlorate 10 mM
+2.5
+0.4
+0.3
-0.4
+0.0
stress
D-Cycloserine 0.05 mg/ml
+2.5
+0.5
-0.1
+0.3
+0.0
lb
LB
+2.5
+0.5
+0.2
+0.3
-0.2
stress
Polymyxin B sulfate 0.00005 mg/ml
+3.2
-0.3
+0.7
-0.1
-0.1
pH
LB, pH8
+4.3
+0.1
+0.3
-0.2
-0.1
pH
LB, pH8
+4.3
+0.3
+0.4
+0.1
+0.0
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