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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc00617 and SMc00618 are separated by 64 nucleotides
SMc00618 and SMc00619 are separated by 11 nucleotides
SMc00619 and SMc00620 are separated by 136 nucleotides
SMc00620 and SMc00621 are separated by 70 nucleotides
SMc00617: SMc00617 - hypothetical protein, at 1,289,361 to 1,290,050
SMc00617
SMc00618: SMc00618 - polyphosphate kinase, at 1,290,115 to 1,292,325
SMc00618
SMc00619: SMc00619 - hypothetical protein, at 1,292,337 to 1,293,860
SMc00619
SMc00620: SMc00620 - signal peptide protein, at 1,293,997 to 1,295,355
SMc00620
SMc00621: SMc00621 - adenylate cyclase 2 protein, at 1,295,426 to 1,296,517
SMc00621
Group
Condition
SMc00617
SMc00618
SMc00619
SMc00620
SMc00621
nitrogen source
Gelatin (N)
N.D.
+0.1
-5.4
+0.1
-0.2
stress
Sisomicin 0.004 mg/ml
N.D.
-0.6
-4.0
+0.0
-0.0
carbon source
Lactulose (C)
N.D.
+0.3
-4.9
-0.1
+0.2
carbon source
D-Mannose (C)
N.D.
-0.0
-3.7
-0.1
-0.1
stress
Fusidic 0.0001 mg/ml
N.D.
+0.3
-4.3
+0.2
-0.1
stress
Nickel (II) chloride 0.5 mM
N.D.
-0.0
-4.0
+0.2
-0.0
stress
copper (II) chloride 1 mM
N.D.
+1.4
-5.4
+0.3
+0.1
carbon source
Beta-Lactose (C)
N.D.
+0.4
-3.6
-0.1
-0.0
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
N.D.
+0.0
-3.5
+0.2
-0.0
carbon source
D-Trehalose (C)
N.D.
+0.2
-3.7
+0.0
+0.1
nitrogen source
L-Arginine (N)
N.D.
+0.4
-4.1
+0.4
+0.0
stress
Thallium(I) acetate 0.001 mg/ml
N.D.
+0.5
-4.1
+0.4
-0.1
carbon source
D-Glucosamine Hydrochloride (C)
N.D.
-0.1
-3.3
-0.0
+0.2
stress
D-Cycloserine 0.05 mg/ml
N.D.
+0.9
-4.4
+0.4
-0.1
stress
Cisplatin 0.001 mg/ml
N.D.
+1.3
-4.4
+0.1
-0.0
stress
Cisplatin 0.0005 mg/ml
N.D.
+1.1
-4.5
+0.4
-0.1
temperature
LB, 30C
N.D.
+0.6
-2.9
-0.2
-0.2
stress
Paraquat dichloride 0.3 mg/ml
N.D.
+0.9
-3.7
+0.1
+0.0
stress
nitrate 40 mM
N.D.
+0.6
-2.8
-0.1
-0.3
stress
Paraquat dichloride 0.2 mg/ml
N.D.
+0.2
-3.2
+0.6
-0.0
carbon source
Maltitol (C)
N.D.
+0.4
-3.1
+0.0
+0.4
pH
LB, pH6
N.D.
+1.0
-3.2
+0.5
-0.2
stress
Paraquat dichloride 0.05 mg/ml
N.D.
+0.4
-2.9
+0.7
-0.0
stress
Paraquat dichloride 0.2 mg/ml
N.D.
+1.0
-2.5
-0.1
-0.1
pH
LB, pH6
N.D.
+1.2
-3.1
+0.3
+0.1
stress
Nickel (II) chloride 1 mM
N.D.
+1.9
-3.7
-0.1
+0.4
lb
LB
N.D.
+0.7
-2.6
+0.6
-0.1
stress
perchlorate 10 mM
N.D.
+1.2
-2.3
+0.5
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
+0.7
+2.7
+0.3
-0.0
tsb
Day1 TSB
N.D.
-0.0
+3.7
+0.0
+0.1
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