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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc00590 and SMc00591 are separated by 310 nucleotides
SMc00591 and SMc00592 are separated by 232 nucleotides
SMc00592 and SMc00593 overlap by 60 nucleotides
SMc00593 and SMc00594 are separated by 135 nucleotides
SMc00590: SMc00590 - ABC transporter ATP-binding protein, at 1,261,374 to 1,263,263
SMc00590
SMc00591: SMc00591 - hypothetical protein, at 1,263,574 to 1,263,855
SMc00591
SMc00592: SMc00592 - hypothetical protein, at 1,264,088 to 1,266,745
SMc00592
SMc00593: SMc00593 - hypothetical protein, at 1,266,686 to 1,267,198
SMc00593
SMc00594: SMc00594 - beta-etherase (BETA-aryl ether cleaving enzyme) protein, at 1,267,334 to 1,268,023
SMc00594
Group
Condition
SMc00590
SMc00591
SMc00592
SMc00593
SMc00594
stress
copper (II) chloride 1 mM
-0.1
-0.4
-0.0
-0.5
-0.3
stress
Cisplatin 0.001 mg/ml
-0.0
-0.2
-0.1
-1.0
-0.0
stress
Thallium(I) acetate 0.001 mg/ml
+0.1
-0.8
-0.0
-0.4
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.2
-0.7
-0.1
-0.3
-0.1
stress
nitrate 40 mM
-0.0
+0.1
-0.1
-0.8
-0.1
nitrogen source
L-Arginine (N)
-0.0
+0.1
-0.1
-0.9
+0.0
stress
3-octanone 0.456 mM
-0.1
-0.2
-0.1
-0.5
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
-0.9
-0.3
-0.2
+0.4
lb no stress control
LB no stress control
-0.1
+0.2
-0.1
-0.7
+0.1
stress
3-octanone 5.310333333 mM
-0.1
-0.5
-0.1
+0.3
-0.0
nitrogen source
nitrate (N)
+0.2
+0.0
-0.2
-0.6
+0.1
lb
LB
+0.3
+0.0
-0.3
-0.2
-0.3
stress
D-Cycloserine 0.05 mg/ml
+0.3
+0.1
-0.1
-0.3
-0.4
stress
Fusidic 0.0001 mg/ml
-0.2
+0.3
-0.1
+0.3
-0.4
dmso control
DMSO control
-0.2
+0.2
-0.1
-0.3
+0.3
carbon source
Lactitol (C)
-0.2
-0.4
+0.1
+0.3
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
+0.1
+0.1
-0.5
+0.4
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.7
-0.5
+0.1
+0.0
-0.3
nitrogen source
Uridine (N)
+0.5
-0.3
-0.0
-0.0
+0.1
stress
3-octanone 0.456 mM
-0.0
-0.4
-0.1
+0.5
+0.3
carbon source
D-Glucose (C)
-0.2
-0.2
+0.0
+0.5
+0.2
stress
Nickel (II) chloride 1 mM
+0.5
-0.4
-0.1
+0.5
-0.1
stress
Cisplatin 0.0005 mg/ml
-0.2
+0.1
+0.1
+0.5
-0.1
stress
perchlorate 10 mM
+0.2
+0.5
-0.2
+0.1
-0.2
nutrient
L-Lysine
-0.1
+0.3
-0.1
+0.5
-0.2
nutrient
L-Histidine
+0.2
-0.1
-0.1
+0.5
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
+0.2
-0.1
+0.5
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.5
+0.4
-0.2
-0.1
+0.3
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
+0.0
+0.4
+0.0
+0.5
+0.2
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.2
+0.4
+0.1
+0.6
-0.0
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