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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc00555 and SMc00556 are separated by 68 nucleotides
SMc00556 and SMc00557 are separated by 63 nucleotides
SMc00557 and SMc00558 are separated by 133 nucleotides
SMc00558 and SMc00559 are separated by 64 nucleotides
SMc00555: SMc00555 - colicin V production transmembrane protein, at 1,225,300 to 1,225,899
SMc00555
SMc00556: SMc00556 - DNA repair protein RadA, at 1,225,968 to 1,227,431
SMc00556
SMc00557: SMc00557 - alanine racemase, at 1,227,495 to 1,228,634
SMc00557
SMc00558: SMc00558 - transcriptional regulator, at 1,228,768 to 1,229,625
SMc00558
SMc00559: SMc00559 - hypothetical protein, at 1,229,690 to 1,230,460
SMc00559
Group
Condition
SMc00555
SMc00556
SMc00557
SMc00558
SMc00559
stress
D-Cycloserine 0.05 mg/ml
-1.4
-1.7
-4.6
-0.1
-0.2
nitrogen source
L-Asparagine (N)
-5.1
-1.0
-0.9
+0.1
-0.1
stress
Cisplatin 0.001 mg/ml
-1.5
-2.7
-0.6
-0.1
-0.1
nitrogen source
D-Glucosamine Hydrochloride (N)
-2.1
-1.1
-0.5
-0.3
-0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.5
-1.7
-1.4
-0.0
+0.1
carbon source
L-Alanine (C)
-2.9
-0.5
-0.4
-0.3
+0.0
lb
LB
-0.4
-1.6
-1.1
-0.1
-0.4
stress
Paraquat dichloride 0.3 mg/ml
-1.1
-0.5
-1.3
-0.3
-0.4
stress
nitrite 20 mM
-0.5
-1.1
-1.9
-0.1
-0.1
stress
Cobalt chloride 0.16 mM
-0.9
-1.3
-0.8
-0.0
-0.7
stress
Thallium(I) acetate 0.001 mg/ml
-0.9
-1.0
-1.1
-0.4
-0.1
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.5
-1.5
-1.3
-0.1
-0.1
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.4
-3.6
-0.6
+0.2
+0.1
stress
Aluminum chloride
-1.5
-1.1
-1.0
+0.2
-0.0
stress
Cisplatin 0.0005 mg/ml
+0.1
-2.9
-0.8
-0.2
+0.4
nitrogen source
L-Histidine (N)
-1.9
-0.2
-0.9
-0.2
-0.2
pH
LB, pH8
-1.2
-0.7
-0.7
-0.3
-0.5
lb
LB
-1.2
-0.9
-0.9
-0.1
-0.2
stress
Paraquat dichloride 0.2 mg/ml
-1.2
-0.7
-0.8
-0.2
-0.3
stress
3-octanone 5.310333333 mM
-1.6
-1.2
-0.1
-0.1
+0.0
stress
perchlorate 10 mM
-2.2
-0.7
-0.3
-0.2
+0.2
nitrogen source
L-Glutamine (N)
-1.1
-0.7
-0.5
-0.2
-0.5
carbon source
D-Glucose (C)
-1.2
-1.0
-0.4
+0.1
-0.5
carbon source
acetate (C)
-1.2
-1.3
-0.1
+0.0
-0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
-1.6
-1.2
-0.2
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.8
-1.5
-1.0
-0.0
+0.6
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.5
-1.2
-1.4
-0.1
-0.3
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.3
-2.5
+0.0
-0.1
+0.1
stress
Chlorite 0.1 mM
+0.5
-1.0
-0.6
-0.3
-0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
-1.3
-0.9
-0.1
+0.4
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