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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc02543 and SMc00550 are separated by 197 nucleotides
SMc00550 and SMc00551 are separated by 106 nucleotides
SMc00551 and SMc00552 are separated by 9 nucleotides
SMc00552 and SMc00553 are separated by 604 nucleotides
SMc02543: SMc02543 - hypothetical protein, at 1,216,832 to 1,218,541
SMc02543
SMc00550: SMc00550 - ABC transporter ATP-binding protein, at 1,218,739 to 1,220,622
SMc00550
SMc00551: SMc00551 - phosphatidylserine decarboxylase, at 1,220,729 to 1,221,427
SMc00551
SMc00552: SMc00552 - CDP-diacylglycerol--serine O-phosphatidyltransferase transmembrane protein, at 1,221,437 to 1,222,306
SMc00552
SMc00553: SMc00553 - oxidoreductase, at 1,222,911 to 1,223,651
SMc00553
Group
Condition
SMc02543
SMc00550
SMc00551
SMc00552
SMc00553
stress
Fusidic 0.0001 mg/ml
-3.4
-0.2
N.D.
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-2.7
-0.4
N.D.
N.D.
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-2.0
-0.6
N.D.
N.D.
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.5
-1.0
N.D.
N.D.
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.7
-0.6
N.D.
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-1.3
-0.9
N.D.
N.D.
N.D.
stress
Nickel (II) chloride 1 mM
-1.7
-0.3
N.D.
N.D.
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.4
-0.5
N.D.
N.D.
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.5
-0.5
N.D.
N.D.
N.D.
stress
Cobalt chloride 0.16 mM
-1.5
-0.3
N.D.
N.D.
N.D.
nitrogen source
L-Arginine (N)
-1.9
+0.1
N.D.
N.D.
N.D.
stress
Sisomicin 0.004 mg/ml
-1.0
-0.7
N.D.
N.D.
N.D.
stress
copper (II) chloride 1 mM
-1.8
+0.2
N.D.
N.D.
N.D.
stress
A22 0.02 mg/ml
-1.1
-0.5
N.D.
N.D.
N.D.
stress
copper (II) chloride 1 mM
-1.5
+0.0
N.D.
N.D.
N.D.
stress
Polymyxin B sulfate 0.00005 mg/ml
-1.0
-0.5
N.D.
N.D.
N.D.
nutrient
Min media with glucose
-1.4
-0.1
N.D.
N.D.
N.D.
nutrient
L-Lysine
-1.3
-0.1
N.D.
N.D.
N.D.
carbon source
Maltitol (C)
-1.4
+0.1
N.D.
N.D.
N.D.
carbon source
D-Glucose (C)
-1.2
-0.1
N.D.
N.D.
N.D.
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
-1.2
-0.1
N.D.
N.D.
N.D.
stress
Nickel (II) chloride 0.5 mM
-1.1
-0.2
N.D.
N.D.
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.4
-0.8
N.D.
N.D.
N.D.
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-1.2
-0.0
N.D.
N.D.
N.D.
lb
LB
-1.0
-0.2
N.D.
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-1.1
-0.1
N.D.
N.D.
N.D.
carbon source
D-Fructose (C)
-1.2
+0.0
N.D.
N.D.
N.D.
nitrogen source
nitrate (N)
-0.9
-0.2
N.D.
N.D.
N.D.
carbon source
NAG (C)
-1.2
+0.1
N.D.
N.D.
N.D.
nutrient
L-Histidine
-1.1
+0.1
N.D.
N.D.
N.D.
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