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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc00539 and SMc00522 are separated by 199 nucleotides
SMc00522 and SMc00521 are separated by 9 nucleotides
SMc00521 and SMc00520 are separated by 18 nucleotides
SMc00520 and SMc00519 are separated by 3 nucleotides
SMc00539: SMc00539 - hypothetical protein, at 1,890,312 to 1,891,637
SMc00539
SMc00522: SMc00522 - ATP-dependent RNA helicase, at 1,891,837 to 1,893,336
SMc00522
SMc00521: SMc00521 - hypothetical protein, at 1,893,346 to 1,893,753
SMc00521
SMc00520: SMc00520 - hypothetical protein, at 1,893,772 to 1,894,089
SMc00520
SMc00519: SMc00519 - hypothetical protein, at 1,894,093 to 1,895,709
SMc00519
Group
Condition
SMc00539
SMc00522
SMc00521
SMc00520
SMc00519
stress
Fusidic 0.0001 mg/ml
+0.2
-3.0
-0.6
+0.1
-0.1
carbon source
acetate (C)
-0.1
-2.1
+0.2
-0.2
-0.1
stress
copper (II) chloride 1 mM
-0.4
-1.8
-0.0
+0.1
-0.1
carbon source
acetate (C)
+0.1
-1.9
+0.3
-0.2
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.4
+1.0
-0.7
+0.5
-0.3
stress
Cisplatin 0.001 mg/ml
-0.5
+1.7
-0.2
+0.1
-0.2
pH
LB, pH8
+0.0
+1.6
-0.4
-0.1
+0.1
stress
Paraquat dichloride 0.2 mg/ml
-0.3
+1.6
-0.3
+0.3
-0.0
nitrogen source
L-Arginine (N)
-0.6
+2.2
+0.1
-0.1
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
+1.6
+0.6
-0.3
+0.2
r2a control
R2A control for volatile experiments
-0.0
+2.0
+0.4
-0.2
-0.1
stress
A22 0.02 mg/ml
+0.0
+1.8
+0.4
-0.1
-0.2
r2a control
R2A control for volatile experiments
-0.1
+1.9
+0.3
+0.0
+0.0
stress
Nickel (II) chloride 1 mM
-0.3
+2.5
-0.1
+0.1
+0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
+0.9
+0.9
+0.3
-0.1
pH
LB, pH6
-0.2
+3.0
+0.0
-0.4
-0.2
stress
Paraquat dichloride 0.2 mg/ml
+0.5
+2.0
-0.1
-0.0
-0.1
pH
LB, pH6
-0.4
+2.9
-0.2
+0.1
-0.1
stress
nitrate 40 mM
+0.1
+1.8
-0.1
+0.4
+0.2
stress
Sisomicin 0.004 mg/ml
+0.1
+1.8
+0.1
+0.2
+0.1
stress
Cobalt chloride 0.16 mM
+0.8
+2.1
-0.1
-0.1
-0.1
stress
perchlorate 10 mM
+0.4
+2.7
-0.3
-0.1
-0.1
r2a control
R2A control for volatile experiments
-0.0
+1.9
+0.4
+0.2
+0.2
stress
D-Cycloserine 0.05 mg/ml
+0.4
+2.3
+0.1
-0.1
+0.0
stress
Paraquat dichloride 0.05 mg/ml
+0.5
+2.4
-0.1
+0.2
-0.2
r2a control
R2A control for volatile experiments
-0.0
+1.9
+0.5
+0.4
+0.0
r2a control
R2A control for volatile experiments
-0.2
+1.8
+0.8
+0.3
+0.2
lb
LB
+0.9
+2.6
-0.3
+0.1
-0.3
lb
LB
+0.9
+2.1
+0.2
+0.1
-0.3
lb
LB
+0.8
+2.9
-0.2
-0.0
+0.0
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