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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc00515 and SMc00514 are separated by 24 nucleotides
SMc00514 and SMc00513 are separated by 159 nucleotides
SMc00513 and SMc00512 overlap by 1 nucleotides
SMc00512 and SMc00511 are separated by 62 nucleotides
SMc00515: SMc00515 - hypothetical protein, at 1,898,073 to 1,899,002
SMc00515
SMc00514: SMc00514 - monooxygenase, at 1,899,027 to 1,899,554
SMc00514
SMc00513: SMc00513 - amino acid-binding periplasmic protein, at 1,899,714 to 1,900,802
SMc00513
SMc00512: SMc00512 - hypothetical protein, at 1,900,802 to 1,901,806
SMc00512
SMc00511: SMc00511 - D-ribulose-5-phosphate 3-epimerase, at 1,901,869 to 1,902,549
SMc00511
Group
Condition
SMc00515
SMc00514
SMc00513
SMc00512
SMc00511
stress
sodium fluoride 100 mM
+0.0
-0.6
+0.0
-0.1
-4.9
carbon source
Uridine (C)
-0.0
-0.1
-0.4
-0.1
-4.5
stress
Fusidic 0.0001 mg/ml
-0.0
-0.1
-1.2
-0.4
-3.4
carbon source
pipercolic (C)
-0.1
-3.7
-1.1
-0.1
-0.1
carbon source
D-Xylose (C)
+0.0
-0.0
-0.5
-0.2
-4.2
carbon source
pipercolic (C)
-0.2
-3.4
-1.0
+0.3
-0.2
carbon source
acetate (C)
+0.0
-1.0
-2.5
-0.4
-0.5
nitrogen source
Uridine (N)
-0.2
-0.3
-0.7
-0.5
-2.3
stress
Cobalt chloride 0.16 mM
-0.3
+0.0
-1.3
+0.0
-2.2
carbon source
L-Lysine (C)
-0.2
-0.9
-1.7
-0.1
-0.8
carbon source
D-Xylose (C)
-0.1
-0.6
-0.6
+0.0
-2.2
stress
copper (II) chloride 1 mM
-0.1
-1.3
+0.4
+0.0
-2.5
stress
A22 0.02 mg/ml
-0.1
-0.3
-2.0
-0.1
-0.9
carbon source
acetate (C)
-0.2
+0.2
-2.8
-0.1
-0.4
stress
Nickel (II) chloride 0.5 mM
-0.2
-0.7
-0.4
+0.1
-2.0
carbon source
D-Ribose (C)
+0.1
-1.0
-0.4
+0.1
-1.9
stress
3-octanone 0.456 mM
-0.2
-2.8
-0.4
-0.2
+0.6
carbon source
L-Proline (C)
-0.2
-1.4
-1.1
+0.1
-0.4
carbon source
L-Lysine (C)
-0.4
-1.4
-1.3
+0.4
-0.3
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.2
-1.9
+0.2
-0.7
-0.8
carbon source
Lactitol (C)
+0.2
+0.2
-1.1
-0.6
-1.2
carbon source
D-Ribose (C)
+0.0
-0.6
-0.3
+0.4
-2.0
carbon source
Lactitol (C)
-0.1
+0.5
-1.3
-0.2
-1.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.0
+1.0
-0.1
+0.8
-4.0
stress
Nickel (II) chloride 1 mM
-0.0
-0.2
+1.3
+0.0
-3.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.5
-1.2
+1.2
+0.3
-1.9
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.7
-1.0
+0.7
+0.6
-0.6
stress
perchlorate 10 mM
-0.2
-0.6
+2.1
-0.3
-0.4
pH
LB, pH6
+0.0
-0.5
+4.0
-0.2
+0.6
pH
LB, pH6
-0.2
-0.3
+3.8
+0.1
+0.8
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