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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc00504 and SMc00503 are separated by 112 nucleotides
SMc00503 and SMc00502 overlap by 4 nucleotides
SMc00502 and SMc00501 are separated by 40 nucleotides
SMc00501 and SMc00500 are separated by 1 nucleotides
SMc00504: SMc00504 - transcriptional regulator, at 1,907,397 to 1,908,635
SMc00504
SMc00503: SMc00503 - hypothetical protein, at 1,908,748 to 1,909,482
SMc00503
SMc00502: SMc00502 - hypothetical protein, at 1,909,479 to 1,910,153
SMc00502
SMc00501: SMc00501 - hypothetical protein, at 1,910,194 to 1,911,078
SMc00501
SMc00500: SMc00500 - hypothetical protein, at 1,911,080 to 1,912,597
SMc00500
Group
Condition
SMc00504
SMc00503
SMc00502
SMc00501
SMc00500
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.4
+0.2
-0.4
-0.6
-0.1
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.4
+0.0
-0.5
-0.7
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
+0.0
-0.3
-0.2
-0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
+0.0
-0.2
-0.1
-0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
+0.3
-0.0
-0.1
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
+0.5
-0.3
-0.2
-0.3
r2a control
R2A control for volatile experiments
-0.4
-0.0
+0.3
-0.3
+0.2
carbon source
L-Alanine (C)
-0.3
+0.3
+0.1
-0.4
+0.1
nitrogen source
L-Arginine (N)
-0.3
+0.3
-0.3
+0.3
-0.1
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
+0.3
+0.0
+0.1
-0.6
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.4
-0.3
-0.4
+0.3
-0.1
carbon source
D-Glucose (C)
-0.4
+0.2
-0.2
+0.4
+0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.1
+0.5
+0.1
-0.7
+0.1
stress
Chlorite 0.1 mM
+0.3
-0.2
+0.1
-0.4
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
+0.5
-0.5
+0.6
-0.1
carbon source
pipercolic (C)
-0.3
+0.2
-0.1
+0.5
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.7
+0.6
-0.1
+0.2
+0.3
pH
LB, pH7
+0.2
+0.2
-0.2
+0.3
-0.3
stress
3-octanone 0.456 mM
-0.1
+0.3
-0.1
+0.5
-0.2
stress
Cisplatin 0.0005 mg/ml
+0.5
+0.2
-0.0
-0.2
-0.2
stress
Chloride 200 mM
+0.2
+0.3
-0.2
+0.3
-0.2
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.6
-0.2
+0.3
-0.0
-0.1
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.1
+0.1
+0.4
+0.3
-0.2
carbon source
D-Mannose (C)
-0.1
-0.1
+0.2
+0.5
+0.2
stress
nitrate 40 mM
+0.3
+0.5
-0.2
+0.2
+0.0
nitrogen source
L-Leucine (N)
+0.0
+0.2
-0.2
+0.7
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
+0.3
+0.0
+0.4
+0.1
stress
copper (II) chloride 1 mM
+0.5
+0.1
-0.2
+0.3
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.0
+0.3
+0.0
+0.9
+0.0
stress
Cisplatin 0.001 mg/ml
+0.0
+0.2
-0.2
+0.9
+0.2
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