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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc00413 and SMc00414 are separated by 14 nucleotides
SMc00414 and SMc00415 are separated by 203 nucleotides
SMc00415 and SMc00416 are separated by 277 nucleotides
SMc00416 and SMc00418 overlap by 11 nucleotides
SMc00413: SMc00413 - hypothetical protein, at 362,782 to 363,363
SMc00413
SMc00414: SMc00414 - hypothetical protein, at 363,378 to 363,980
SMc00414
SMc00415: SMc00415 - DNA polymerase III subunit beta, at 364,184 to 365,302
SMc00415
SMc00416: SMc00416 - hypothetical protein, at 365,580 to 366,509
SMc00416
SMc00418: SMc00418 - hypothetical protein, at 366,499 to 366,867
SMc00418
Group
Condition
SMc00413
SMc00414
SMc00415
SMc00416
SMc00418
carbon source
D-Fructose (C)
+0.0
-4.3
N.D.
-0.3
+0.1
carbon source
L-Proline (C)
+0.0
-4.4
N.D.
-0.3
+0.2
carbon source
Protocatechuic Acid (C)
-0.6
-3.8
N.D.
+0.1
-0.0
carbon source
Protocatechuic Acid (C)
-0.1
-3.8
N.D.
-0.1
+0.0
carbon source
Glycerol (C)
-0.1
-3.5
N.D.
+0.0
+0.1
nitrogen source
L-Leucine (N)
-1.1
-2.4
N.D.
-0.1
+0.2
carbon source
L-Arabinose (C)
-0.0
-3.4
N.D.
-0.3
+0.4
carbon source
pipercolic (C)
+0.3
-3.0
N.D.
-0.7
+0.2
carbon source
D-Galactose (C)
-0.3
-2.9
N.D.
-0.2
+0.3
carbon source
D-Mannose (C)
+0.3
-3.4
N.D.
-0.1
-0.0
nutrient
L-Histidine
-0.1
-2.8
N.D.
-0.3
+0.1
nutrient
Min media with glucose
-0.1
-2.7
N.D.
-0.5
+0.2
carbon source
L-Rhamnose (C)
+0.3
-3.2
N.D.
-0.1
-0.0
carbon source
D-Raffinose (C)
+0.1
-3.2
N.D.
-0.0
+0.1
carbon source
D-Tagatose (C)
+0.0
-3.2
N.D.
-0.0
+0.3
carbon source
pipercolic (C)
-0.1
-2.6
N.D.
-0.5
+0.4
carbon source
D-Xylose (C)
+0.5
-3.4
N.D.
-0.3
+0.4
carbon source
L-Lysine (C)
-0.3
-2.4
N.D.
-0.2
+0.4
carbon source
L-Fucose (C)
+0.2
-3.1
N.D.
+0.2
+0.2
nutrient
Min media with glucose
+0.4
-2.8
N.D.
-0.3
+0.3
carbon source
D-Sorbitol (C)
+0.2
-2.9
N.D.
+0.1
+0.3
carbon source
D-Glucose (C)
+0.1
-2.9
N.D.
+0.0
+0.5
carbon source
D-Arabinose (C)
+0.3
-3.1
N.D.
+0.4
+0.3
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.2
-2.6
N.D.
+0.5
+0.5
carbon source
D-Maltose (C)
+0.4
-2.5
N.D.
+0.4
+0.1
carbon source
L-Lactate (C)
+0.4
-2.4
N.D.
-0.0
+0.5
stress
Sisomicin 0.004 mg/ml
-0.3
+1.6
N.D.
-3.1
+0.3
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.1
-2.4
N.D.
+0.3
+0.6
pH
LB, pH8
-0.4
+2.1
N.D.
-0.4
+0.3
nitrogen source
L-Arginine (N)
+0.1
+2.5
N.D.
-0.6
-0.1
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