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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc00247 and SMc00316 are separated by 277 nucleotides
SMc00316 and SMc00317 overlap by 33 nucleotides
SMc00317 and SMc00248 are separated by 139 nucleotides
SMc00248 and SMc00303 are separated by 557 nucleotides
SMc00247: SMc00247 - phosphatidylcholine synthase, at 1,814,867 to 1,815,592
SMc00247
SMc00316: SMc00316 - 2-octaprenyl-6-methoxyphenyl hydroxylase, at 1,815,870 to 1,817,147
SMc00316
SMc00317: SMc00317 - hypothetical protein, at 1,817,115 to 1,818,077
SMc00317
SMc00248: SMc00248 - cytochrome C-type biogenesis protein, at 1,818,217 to 1,818,960
SMc00248
SMc00303: SMc00303 - tRNA-Lys, at 1,819,518 to 1,819,593
SMc00303
Group
Condition
SMc00247
SMc00316
SMc00317
SMc00248
SMc00303
stress
sodium fluoride 100 mM
-2.3
N.D.
+0.1
N.D.
N.D.
carbon source
L-Glutamine (C)
-1.3
N.D.
-0.9
N.D.
N.D.
stress
Aluminum chloride
-1.9
N.D.
+0.0
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-1.3
N.D.
-0.1
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-1.2
N.D.
-0.0
N.D.
N.D.
pH
LB, pH6
-1.0
N.D.
-0.2
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-1.3
N.D.
+0.2
N.D.
N.D.
pH
LB, pH6
-0.9
N.D.
-0.2
N.D.
N.D.
stress
copper (II) chloride 1 mM
-1.0
N.D.
+0.0
N.D.
N.D.
nitrogen source
NAG (N)
+0.5
N.D.
-0.5
N.D.
N.D.
carbon source
pipercolic (C)
+0.6
N.D.
-0.4
N.D.
N.D.
nitrogen source
L-Arginine (N)
+0.8
N.D.
-0.2
N.D.
N.D.
stress
Sisomicin 0.004 mg/ml
+1.1
N.D.
-0.0
N.D.
N.D.
lb
LB
+1.3
N.D.
-0.1
N.D.
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.7
N.D.
+0.5
N.D.
N.D.
lb
LB
+1.4
N.D.
-0.2
N.D.
N.D.
stress
Cobalt chloride 0.16 mM
+1.3
N.D.
-0.1
N.D.
N.D.
lb
LB
+1.3
N.D.
+0.0
N.D.
N.D.
stress
Polymyxin B sulfate 0.00005 mg/ml
+1.1
N.D.
+0.3
N.D.
N.D.
lb
LB
+1.5
N.D.
-0.1
N.D.
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+1.3
N.D.
+0.1
N.D.
N.D.
lb
LB
+1.4
N.D.
+0.0
N.D.
N.D.
pH
LB, pH8
+1.4
N.D.
+0.1
N.D.
N.D.
pH
LB, pH8
+1.5
N.D.
+0.0
N.D.
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+1.4
N.D.
+0.1
N.D.
N.D.
stress
perchlorate 10 mM
+1.5
N.D.
+0.2
N.D.
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+1.3
N.D.
+0.4
N.D.
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+1.9
N.D.
+0.1
N.D.
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+1.8
N.D.
+0.2
N.D.
N.D.
stress
Chloride 200 mM
+2.4
N.D.
-0.0
N.D.
N.D.
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