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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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500 nt
SMc00288 and SMc00289 overlap by 1 nucleotides
SMc00289 and SMc00290 are separated by 196 nucleotides
SMc00290 and SMc00291 are separated by 391 nucleotides
SMc00291 and SMc00304 are separated by 161 nucleotides
SMc00288: SMc00288 - signal peptide protein, at 1,858,529 to 1,859,020
SMc00288
SMc00289: SMc00289 - cold shock transcription regulator protein, at 1,859,020 to 1,859,598
SMc00289
SMc00290: SMc00290 - lactoylglutathione lyase, at 1,859,795 to 1,860,235
SMc00290
SMc00291: SMc00291 - lipoprotein, at 1,860,627 to 1,861,946
SMc00291
SMc00304: SMc00304 - tRNA-Glu, at 1,862,108 to 1,862,183
SMc00304
Group
Condition
SMc00288
SMc00289
SMc00290
SMc00291
SMc00304
nutrient
L-Lysine
-1.5
N.D.
-0.2
-0.4
N.D.
nutrient
Min media with glucose
-1.1
N.D.
-0.1
-0.5
N.D.
carbon source
D-Mannose (C)
-1.3
N.D.
+0.0
-0.1
N.D.
nitrogen source
L-Leucine (N)
-1.0
N.D.
+0.0
-0.3
N.D.
carbon source
palatinose (C)
-1.2
N.D.
+0.1
-0.1
N.D.
carbon source
L-Rhamnose (C)
-0.9
N.D.
-0.3
-0.0
N.D.
nitrogen source
Uridine (N)
-0.6
N.D.
-0.1
-0.5
N.D.
carbon source
acetate (C)
-0.8
N.D.
-0.2
-0.2
N.D.
nitrogen source
Gelatin (N)
-0.6
N.D.
-0.2
-0.3
N.D.
nitrogen source
L-Asparagine (N)
-0.9
N.D.
+0.1
-0.3
N.D.
nutrient
L-Histidine
-0.9
N.D.
-0.2
-0.0
N.D.
pH
LB, pH8
-1.2
N.D.
+0.2
-0.1
N.D.
nitrogen source
L-Histidine (N)
-0.8
N.D.
+0.1
-0.3
N.D.
nutrient
L-Lysine
-1.1
N.D.
-0.2
+0.2
N.D.
stress
Fusidic 0.0001 mg/ml
-1.3
N.D.
+0.1
+0.1
N.D.
stress
Polymyxin B sulfate 0.00005 mg/ml
-1.4
N.D.
-0.1
+0.6
N.D.
carbon source
L-Malic (C)
-1.1
N.D.
+0.1
+0.1
N.D.
pH
LB, pH8
-1.0
N.D.
+0.1
-0.0
N.D.
carbon source
D-Leucrose (C)
-0.7
N.D.
+0.2
-0.3
N.D.
carbon source
L-Arabinose (C)
-0.8
N.D.
+0.1
-0.2
N.D.
carbon source
D-Ribose (C)
-1.1
N.D.
+0.1
+0.1
N.D.
nitrogen source
L-Arginine (N)
-0.8
N.D.
+0.2
-0.1
N.D.
carbon source
D-Tagatose (C)
-0.9
N.D.
-0.0
+0.2
N.D.
nitrogen source
nitrate (N)
-0.3
N.D.
+0.2
-0.6
N.D.
carbon source
acetate (C)
-0.6
N.D.
-0.3
+0.3
N.D.
carbon source
D-Glucose (C)
-0.7
N.D.
-0.1
+0.3
N.D.
stress
Aluminum chloride
-0.5
N.D.
+0.5
+0.5
N.D.
stress
perchlorate 10 mM
+0.6
N.D.
+0.5
-0.1
N.D.
lb
LB
+0.6
N.D.
+0.6
+0.2
N.D.
stress
D-Cycloserine 0.05 mg/ml
+1.0
N.D.
+0.5
+0.1
N.D.
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