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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc00238 and SMc00239 are separated by 58 nucleotides
SMc00239 and SMc00240 are separated by 210 nucleotides
SMc00240 and SMc00241 are separated by 132 nucleotides
SMc00241 and SMc00242 are separated by 172 nucleotides
SMc00238: SMc00238 - molybdopterin biosynthesis protein, at 1,804,640 to 1,805,860
SMc00238
SMc00239: SMc00239 - hypothetical protein, at 1,805,919 to 1,806,425
SMc00239
SMc00240: SMc00240 - hypothetical protein, at 1,806,636 to 1,807,928
SMc00240
SMc00241: SMc00241 - transcriptional regulator, at 1,808,061 to 1,808,810
SMc00241
SMc00242: SMc00242 - signal peptide protein, at 1,808,983 to 1,810,116
SMc00242
Group
Condition
SMc00238
SMc00239
SMc00240
SMc00241
SMc00242
stress
Chlorite 0.1 mM
-1.7
+0.6
-0.2
-6.1
-0.1
stress
Nickel (II) chloride 1 mM
-0.0
-4.6
+2.4
-1.6
+0.0
stress
6-Pentyl-2H-pyran-2-one 0.4557668333 mM
-0.1
-2.7
-0.2
-0.4
-0.0
stress
Thallium(I) acetate 0.0025 mg/ml
+0.2
-2.4
+0.2
-1.2
+0.1
lb no stress control
LB no stress control
-0.2
-1.7
-0.4
-0.3
-0.2
stress
3-octanone 5.310333333 mM
-0.1
-2.6
+0.1
+0.0
-0.1
stress
3-octanone 0.456 mM
-0.1
-0.6
-0.1
-1.7
-0.2
stress
1-octen-3-ol 0.6030326667 mM
+0.1
-1.6
-0.1
-1.0
+0.0
stress
Cisplatin 0.001 mg/ml
+0.1
-3.3
+0.2
+0.9
+0.2
stress
Aluminum chloride
+0.2
-1.8
-0.2
-0.0
-0.1
carbon source
Lactitol (C)
-0.5
-1.3
+0.1
-0.2
+0.2
pH
LB, pH6
-0.1
-1.9
+0.1
+0.4
+0.1
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.2
-1.4
+0.3
-0.4
-0.1
nitrogen source
L-Asparagine (N)
-0.1
+0.3
+0.3
-1.8
-0.1
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.5
+1.1
-0.1
-2.7
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.6
+1.9
-0.2
-2.1
+0.0
nitrogen source
L-Histidine (N)
-0.3
+0.8
-0.1
-0.9
-0.2
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.2
-1.3
-0.1
+0.8
+0.0
pH
LB, pH8
-0.1
+0.9
+0.3
-1.3
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
-0.9
-0.2
+1.1
+0.3
carbon source
acetate (C)
-0.5
+1.2
-0.3
+0.3
-0.0
carbon source
D-Glucose (C)
-0.1
+0.8
-0.2
+1.3
-0.0
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
+0.3
+1.3
-0.1
+0.6
-0.0
carbon source
D-Ribose (C)
-0.1
+1.0
+0.1
+1.2
-0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
+1.5
+0.0
+0.4
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
+1.5
-0.0
+0.6
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
+1.3
+0.2
+0.8
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
+1.5
+0.3
+0.9
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.0
+0.9
-0.1
+1.7
+0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
+1.3
+0.1
+1.6
+0.3
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