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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc00176 and SMc00175 are separated by 84 nucleotides
SMc00175 and SMc00174 are separated by 11 nucleotides
SMc00174 and SMc00459 are separated by 185 nucleotides
SMc00459 and SMc00172 overlap by 49 nucleotides
SMc00176: SMc00176 - hypothetical protein, at 1,986,348 to 1,987,724
SMc00176
SMc00175: SMc00175 - ABC transporter ATP-binding protein, at 1,987,809 to 1,988,618
SMc00175
SMc00174: SMc00174 - hypothetical protein, at 1,988,630 to 1,989,769
SMc00174
SMc00459: SMc00459 - hypothetical protein, at 1,989,955 to 1,990,938
SMc00459
SMc00172: SMc00172 - TARNSPORT protein transmembrane, at 1,990,890 to 1,992,113
SMc00172
Group
Condition
SMc00176
SMc00175
SMc00174
SMc00459
SMc00172
carbon source
Myristic (C)
-3.7
-4.3
-3.1
-0.4
+0.1
carbon source
Myristic (C)
-3.2
-3.5
-3.7
-0.2
+0.1
stress
1-octen-3-ol 0.5427293333 mM
-1.4
-1.3
-0.9
-0.1
+0.2
stress
6-Pentyl-2H-pyran-2-one 0.4557668333 mM
-1.3
-0.9
-1.1
+0.2
-0.1
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
-1.5
-0.4
-0.9
-0.2
+0.1
stress
3-octanone 0.456 mM
-0.6
-0.8
-1.1
-0.2
-0.1
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
-0.7
-1.1
-0.7
-0.4
+0.1
dmso control
DMSO control
-0.7
-1.1
-1.1
+0.1
+0.1
lb no stress control
LB no stress control
-1.2
-1.1
-0.8
+0.2
+0.1
lb no stress control
LB no stress control
-0.5
-1.0
-1.0
-0.3
+0.0
stress
1-octen-3-ol 0.6030326667 mM
-1.1
-0.6
-0.8
-0.3
+0.1
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
-1.0
-0.9
-0.8
+0.1
+0.1
dmso control
DMSO control
-0.9
-1.3
-0.5
+0.0
+0.1
stress
3-octanone 5.310333333 mM
-0.7
-1.3
-0.7
+0.5
-0.1
carbon source
D-Arabinose (C)
-0.8
-1.0
-0.6
+0.3
-0.0
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
-0.5
-0.8
-0.9
+0.4
-0.2
stress
1-octen-3-ol 0.5427293333 mM
-1.0
-0.8
-0.6
+0.5
-0.1
stress
Paraquat dichloride 0.2 mg/ml
+0.7
+0.4
+0.7
-0.9
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.8
+0.7
+0.8
-0.7
-0.3
stress
Cisplatin 0.001 mg/ml
+1.1
-0.1
+1.0
-0.5
+0.3
carbon source
D-Fructose (C)
+0.8
+0.8
+0.9
-0.3
-0.2
nutrient
L-Histidine
+0.8
+0.9
+0.8
-0.4
-0.2
stress
perchlorate 10 mM
+0.6
+1.0
+1.2
-0.6
-0.1
nutrient
L-Lysine
+0.8
+0.8
+1.1
-0.2
-0.0
nutrient
L-Lysine
+1.0
+1.1
+0.9
-0.4
-0.0
nutrient
L-Histidine
+1.3
+1.0
+1.2
-0.6
-0.2
nutrient
Min media with glucose
+1.3
+1.4
+1.3
-0.4
+0.0
nutrient
Min media with glucose
+1.2
+1.4
+1.3
-0.1
-0.1
pH
LB, pH6
+2.3
+2.1
+2.4
-0.3
-0.2
pH
LB, pH6
+2.3
+2.4
+2.4
-0.1
+0.0
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