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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc00062 and SMc00063 are separated by 154 nucleotides
SMc00063 and SMc00128 are separated by 565 nucleotides
SMc00128 and SMc00457 overlap by 8 nucleotides
SMc00457 and SMc00122 are separated by 97 nucleotides
SMc00062: SMc00062 - hypothetical protein, at 1,098,050 to 1,098,685
SMc00062
SMc00063: SMc00063 - hypothetical protein, at 1,098,840 to 1,099,124
SMc00063
SMc00128: SMc00128 - hypothetical protein, at 1,099,690 to 1,100,235
SMc00128
SMc00457: SMc00457 - hypothetical protein, at 1,100,228 to 1,100,815
SMc00457
SMc00122: SMc00122 - penicillin-binding protein, at 1,100,913 to 1,103,147
SMc00122
Group
Condition
SMc00062
SMc00063
SMc00128
SMc00457
SMc00122
r2a control
R2A control for volatile experiments
-0.4
N.D.
N.D.
N.D.
N.D.
r2a control
R2A control for volatile experiments
-0.4
N.D.
N.D.
N.D.
N.D.
r2a control
R2A control for volatile experiments
-0.4
N.D.
N.D.
N.D.
N.D.
carbon source
palatinose (C)
-0.3
N.D.
N.D.
N.D.
N.D.
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.3
N.D.
N.D.
N.D.
N.D.
stress
Nickel (II) chloride 1 mM
-0.3
N.D.
N.D.
N.D.
N.D.
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.3
N.D.
N.D.
N.D.
N.D.
stress
Paraquat dichloride 0.3 mg/ml
-0.2
N.D.
N.D.
N.D.
N.D.
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
-0.2
N.D.
N.D.
N.D.
N.D.
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
-0.2
N.D.
N.D.
N.D.
N.D.
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.2
N.D.
N.D.
N.D.
N.D.
carbon source
Lactitol (C)
-0.2
N.D.
N.D.
N.D.
N.D.
stress
1-octen-3-ol 0.6030326667 mM
-0.2
N.D.
N.D.
N.D.
N.D.
pH
LB, pH6
-0.2
N.D.
N.D.
N.D.
N.D.
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.2
N.D.
N.D.
N.D.
N.D.
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.2
N.D.
N.D.
N.D.
N.D.
stress
Thallium(I) acetate 0.001 mg/ml
+0.2
N.D.
N.D.
N.D.
N.D.
nutrient
L-Lysine
+0.2
N.D.
N.D.
N.D.
N.D.
stress
Chloride 200 mM
+0.2
N.D.
N.D.
N.D.
N.D.
carbon source
D-Sorbitol (C)
+0.2
N.D.
N.D.
N.D.
N.D.
carbon source
Fumarate (C)
+0.2
N.D.
N.D.
N.D.
N.D.
carbon source
Methyl beta-D-glucopyranoside (C)
+0.2
N.D.
N.D.
N.D.
N.D.
nitrogen source
L-Serine (N)
+0.2
N.D.
N.D.
N.D.
N.D.
nitrogen source
NAG (N)
+0.2
N.D.
N.D.
N.D.
N.D.
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.3
N.D.
N.D.
N.D.
N.D.
nutrient
Min media with glucose
+0.3
N.D.
N.D.
N.D.
N.D.
nitrogen source
L-Glutamine (N)
+0.3
N.D.
N.D.
N.D.
N.D.
nitrogen source
L-Leucine (N)
+0.3
N.D.
N.D.
N.D.
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
N.D.
N.D.
N.D.
N.D.
stress
Fusidic 0.0001 mg/ml
+0.3
N.D.
N.D.
N.D.
N.D.
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