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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc00042 and SMc00106 are separated by 147 nucleotides
SMc00106 and SMc00043 are separated by 232 nucleotides
SMc00043 and SMc00107 are separated by 65 nucleotides
SMc00107 and SMc00044 are separated by 127 nucleotides
SMc00042: SMc00042 - aminotransferase, at 1,065,361 to 1,066,242
SMc00042
SMc00106: SMc00106 - hypothetical protein, at 1,066,390 to 1,066,800
SMc00106
SMc00043: SMc00043 - superoxide dismutase Fe protein, at 1,067,033 to 1,067,635
SMc00043
SMc00107: SMc00107 - transcriptional regulator, at 1,067,701 to 1,068,414
SMc00107
SMc00044: SMc00044 - amino acid efflux protein, at 1,068,542 to 1,069,180
SMc00044
Group
Condition
SMc00042
SMc00106
SMc00043
SMc00107
SMc00044
nitrogen source
L-Asparagine (N)
+0.0
+0.2
N.D.
-1.3
-0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.6
+0.2
N.D.
-0.4
-0.4
stress
Aluminum chloride
-0.4
+0.5
N.D.
-0.6
-0.3
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.2
+0.3
N.D.
-0.1
-0.6
stress
Cisplatin 0.001 mg/ml
+0.3
-0.7
N.D.
-0.1
-0.1
carbon source
succinate (C)
+0.1
-0.4
N.D.
-0.6
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.4
-0.8
N.D.
+0.6
+0.0
nitrogen source
L-Histidine (N)
-0.0
+0.2
N.D.
-0.8
+0.0
carbon source
Mannobiose (C)
-0.2
-0.1
N.D.
+0.3
-0.6
nitrogen source
NAG (N)
+0.4
-0.4
N.D.
-0.7
+0.2
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
+0.1
-0.2
N.D.
+0.3
-0.6
nitrogen source
L-Leucine (N)
-0.4
+0.6
N.D.
-0.4
-0.2
nitrogen source
L-Glutamine (N)
-0.1
+0.3
N.D.
-0.5
+0.1
stress
Chlorite 0.1 mM
+0.2
+0.5
N.D.
-0.7
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.0
+0.4
N.D.
+0.2
-0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.8
+0.0
N.D.
+0.3
+0.6
nitrogen source
L-Arginine (N)
+0.1
+0.6
N.D.
-0.5
+0.0
nitrogen source
Cytosine (N)
+0.6
+0.3
N.D.
-0.2
-0.5
stress
nitrate 40 mM
+0.5
-0.4
N.D.
-0.2
+0.3
carbon source
acetate (C)
+0.4
-0.1
N.D.
-0.5
+0.4
carbon source
Protocatechuic Acid (C)
+0.1
+0.1
N.D.
-0.3
+0.5
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.0
+1.0
N.D.
-0.7
+0.1
carbon source
D-Xylose (C)
+0.3
-0.2
N.D.
-0.3
+0.7
carbon source
Myristic (C)
+0.3
+0.1
N.D.
-0.3
+0.3
carbon source
5-Aminovaleric (C)
+0.1
+0.1
N.D.
-0.3
+0.6
stress
Cisplatin 0.0005 mg/ml
+0.4
-0.3
N.D.
+0.2
+0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
+0.0
N.D.
+0.6
+0.3
stress
Thallium(I) acetate 0.0025 mg/ml
+0.6
+0.1
N.D.
+0.2
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.0
+0.1
N.D.
+0.3
+0.7
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
+0.4
N.D.
+0.2
+0.5
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