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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc00037 and SMc00097 are separated by 28 nucleotides
SMc00097 and SMc00038 are separated by 265 nucleotides
SMc00038 and SMc00039 are separated by 236 nucleotides
SMc00039 and SMc00098 are separated by 45 nucleotides
SMc00037: SMc00037 - transcriptional regulator, at 1,051,802 to 1,052,710
SMc00037
SMc00097: SMc00097 - glutathione S-transferase, at 1,052,739 to 1,053,398
SMc00097
SMc00038: SMc00038 - hypothetical protein, at 1,053,664 to 1,055,982
SMc00038
SMc00039: SMc00039 - hypothetical protein, at 1,056,219 to 1,056,947
SMc00039
SMc00098: SMc00098 - transcriptional regulator, at 1,056,993 to 1,057,469
SMc00098
Group
Condition
SMc00037
SMc00097
SMc00038
SMc00039
SMc00098
stress
Nickel (II) chloride 1 mM
-0.2
-0.2
-0.8
+0.3
-0.9
nitrogen source
L-Leucine (N)
-0.1
-0.3
-0.8
+0.2
-0.7
carbon source
Lactitol (C)
-0.1
-0.4
-0.8
+0.1
-0.3
r2a control
R2A control for volatile experiments
-0.2
-0.3
-0.8
+0.2
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.0
-1.4
-0.1
+0.5
-0.3
stress
Paraquat dichloride 0.3 mg/ml
+0.2
-0.3
-0.8
-0.0
-0.2
nitrogen source
L-Asparagine (N)
+0.1
-0.3
-1.0
+0.2
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
-0.1
-1.0
+0.5
-0.2
stress
3-octanone 5.310333333 mM
-0.1
-0.4
-0.7
+0.1
+0.2
stress
perchlorate 10 mM
+0.1
-0.0
-0.6
+0.3
-0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
-0.2
-0.7
+0.4
-0.4
carbon source
acetate (C)
+0.5
-0.4
-1.0
+0.2
+0.2
carbon source
D-Fructose (C)
+0.0
+0.2
-0.7
+0.2
+0.2
stress
Paraquat dichloride 0.05 mg/ml
+0.3
+0.1
-0.4
+0.3
-0.4
stress
Thallium(I) acetate 0.0025 mg/ml
+0.2
-0.3
+0.6
-0.2
-0.2
r2a control
R2A control for volatile experiments
-0.0
+0.5
-0.3
+0.2
-0.3
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.2
+0.4
-0.7
+0.1
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.0
-0.2
+0.8
-0.4
+0.1
nitrogen source
L-Arginine (N)
+0.2
-0.6
+0.6
+0.3
+0.1
nitrogen source
L-Histidine (N)
+0.6
+0.2
-0.5
+0.3
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
+0.2
+0.4
+0.6
-0.4
stress
Aluminum chloride
+0.2
+0.7
+0.1
+0.4
-0.6
stress
Chlorite 0.1 mM
+0.3
+0.5
+0.1
+0.2
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
+0.1
+1.1
+0.2
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
+0.4
+0.3
+0.3
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
+0.2
+1.0
+0.4
-0.3
carbon source
L-Lysine (C)
+0.3
-0.2
+0.5
+0.3
+0.2
tsb
Day4 LB
+1.3
-0.1
+0.2
-0.0
-0.1
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.5
+0.3
+0.6
+0.1
-0.0
stress
Cisplatin 0.001 mg/ml
+0.0
+0.5
+1.6
+0.1
-0.7
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