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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc00083 and SMc00084 are separated by 163 nucleotides
SMc00084 and SMc00026 are separated by 293 nucleotides
SMc00026 and SMc00087 are separated by 54 nucleotides
SMc00087 and SMc00125 are separated by 253 nucleotides
SMc00083: SMc00083 - hypothetical protein, at 1,026,097 to 1,026,345
SMc00083
SMc00084: SMc00084 - hypothetical protein, at 1,026,509 to 1,026,898
SMc00084
SMc00026: SMc00026 - hypothetical protein, at 1,027,192 to 1,028,100
SMc00026
SMc00087: SMc00087 - hydrolase, at 1,028,155 to 1,029,063
SMc00087
SMc00125: SMc00125 - tRNA-Gln, at 1,029,317 to 1,029,391
SMc00125
Group
Condition
SMc00083
SMc00084
SMc00026
SMc00087
SMc00125
carbon source
Myristic (C)
+0.0
-0.2
-0.0
-3.0
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-1.8
+0.3
-1.4
-0.1
N.D.
carbon source
Myristic (C)
-0.1
+0.3
+0.1
-3.1
N.D.
stress
copper (II) chloride 1 mM
-0.4
-0.2
-1.4
-0.2
N.D.
carbon source
Protocatechuic Acid (C)
-0.3
-0.4
+0.0
-1.2
N.D.
carbon source
5-Aminovaleric (C)
-0.4
+0.4
+0.3
-1.7
N.D.
carbon source
L-Leucine (C)
-0.1
+0.4
+0.1
-1.6
N.D.
nitrogen source
L-Arginine (N)
-0.4
-0.7
+0.6
-0.4
N.D.
carbon source
Lactitol (C)
-0.1
+0.1
+0.3
-1.1
N.D.
pH
LB, pH6
+0.5
+0.3
-1.3
-0.1
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.0
+0.5
-1.0
-0.1
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.8
-0.1
-0.9
-0.3
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.5
+0.4
-0.6
-0.7
N.D.
carbon source
5-Aminovaleric (C)
+0.0
+0.5
+0.4
-1.1
N.D.
stress
Cisplatin 0.001 mg/ml
+0.5
+0.3
-0.7
-0.0
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+1.0
-0.0
-0.5
-0.4
N.D.
nitrogen source
L-Histidine (N)
-0.5
+0.5
+0.4
-0.2
N.D.
stress
Sisomicin 0.004 mg/ml
+0.3
+0.3
+0.5
-0.6
N.D.
carbon source
acetate (C)
+0.1
+0.5
+0.5
-0.6
N.D.
lb
LB
-0.0
-0.3
+1.3
-0.2
N.D.
stress
D-Cycloserine 0.05 mg/ml
+0.2
-0.5
+1.2
-0.0
N.D.
stress
Paraquat dichloride 0.3 mg/ml
+1.0
+0.4
-0.4
-0.1
N.D.
stress
Nickel (II) chloride 0.5 mM
-0.1
-0.2
+1.3
-0.0
N.D.
stress
Cobalt chloride 0.16 mM
+0.1
-0.2
+1.5
+0.0
N.D.
lb
LB
+0.5
-0.2
+0.9
+0.1
N.D.
lb
LB
-0.2
+0.3
+1.3
+0.1
N.D.
stress
Thallium(I) acetate 0.001 mg/ml
+0.5
+0.3
+0.8
+0.1
N.D.
stress
Thallium(I) acetate 0.0025 mg/ml
+0.9
-0.1
+1.1
-0.1
N.D.
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.1
+0.5
+1.5
-0.1
N.D.
stress
Paraquat dichloride 0.2 mg/ml
+0.3
+0.2
+1.9
+0.1
N.D.
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