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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc00079 and SMc00080 are separated by 184 nucleotides
SMc00080 and SMc00021 are separated by 169 nucleotides
SMc00021 and SMc00081 are separated by 134 nucleotides
SMc00081 and SMc00452 are separated by 72 nucleotides
SMc00079: SMc00079 - hypothetical protein, at 1,012,771 to 1,013,466
SMc00079
SMc00080: SMc00080 - hypothetical protein, at 1,013,651 to 1,014,334
SMc00080
SMc00021: SMc00021 - adenine DNA methyltransferase, at 1,014,504 to 1,015,634
SMc00021
SMc00081: SMc00081 - hypothetical protein, at 1,015,769 to 1,016,425
SMc00081
SMc00452: SMc00452 - A/G-specific adenine glycosylase, at 1,016,498 to 1,017,598
SMc00452
Group
Condition
SMc00079
SMc00080
SMc00021
SMc00081
SMc00452
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.4
-0.8
N.D.
-0.3
-0.3
carbon source
Xylobiose (C)
-0.4
-1.0
N.D.
+0.0
-0.3
stress
Thallium(I) acetate 0.0025 mg/ml
+0.3
-0.8
N.D.
-0.6
-0.4
carbon source
D-Glucosamine Hydrochloride (C)
-1.5
+0.1
N.D.
-0.2
+0.1
stress
Paraquat dichloride 0.3 mg/ml
+0.1
-0.1
N.D.
-1.0
-0.4
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.7
-0.6
N.D.
-0.1
-0.1
carbon source
D-Mannitol (C)
+0.2
-1.1
N.D.
-0.3
-0.1
carbon source
Protocatechuic Acid (C)
+0.2
-0.9
N.D.
-0.3
-0.1
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
-0.3
-0.7
N.D.
+0.2
-0.2
r2a control
R2A control for volatile experiments
-0.5
-0.5
N.D.
+0.2
-0.1
carbon source
D-Glucose (C)
-0.1
-0.7
N.D.
+0.4
-0.3
lb
LB
+0.4
-0.8
N.D.
-0.1
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+1.0
-1.2
N.D.
+0.3
-0.5
stress
Cisplatin 0.001 mg/ml
+0.2
+0.3
N.D.
-0.5
-0.6
stress
nitrite 20 mM
+0.4
-0.8
N.D.
-0.4
+0.2
stress
Cisplatin 0.0005 mg/ml
+0.4
+0.3
N.D.
-0.6
-0.4
stress
nitrate 40 mM
+0.9
-0.2
N.D.
-0.4
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.4
+0.5
N.D.
-0.1
-0.3
pH
LB, pH7
+0.2
+0.5
N.D.
-0.4
+0.3
nitrogen source
L-Leucine (N)
-0.4
+1.2
N.D.
-0.3
+0.1
nitrogen source
L-Arginine (N)
+0.6
-0.6
N.D.
+0.3
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.7
-0.4
N.D.
+0.0
+0.3
carbon source
L-Alanine (C)
+0.4
+0.6
N.D.
-0.2
+0.4
nitrogen source
NAG (N)
+0.8
+0.7
N.D.
-0.5
+0.1
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.6
+1.1
N.D.
-0.4
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
-0.3
N.D.
+0.9
+0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.4
+0.4
N.D.
+0.2
+0.4
stress
Chlorite 0.1 mM
+0.6
+0.8
N.D.
+0.1
+0.1
nitrogen source
Gly-DL-Asp (N)
+0.0
+1.1
N.D.
+0.2
+0.4
nitrogen source
Cytosine (N)
-0.2
+1.4
N.D.
+0.6
+0.3
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