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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc00006 and SMc00070 are separated by 10 nucleotides
SMc00070 and SMc00007 are separated by 440 nucleotides
SMc00007 and SMc00008 are separated by 91 nucleotides
SMc00008 and SMc00071 are separated by 68 nucleotides
SMc00006: SMc00006 - hypothetical protein, at 987,452 to 988,036
SMc00006
SMc00070: SMc00070 - signal peptide protein, at 988,047 to 988,307
SMc00070
SMc00007: SMc00007 - chorismate synthase, at 988,748 to 989,845
SMc00007
SMc00008: SMc00008 - riboflavin biosynthesis protein RibA, at 989,937 to 991,037
SMc00008
SMc00071: SMc00071 - hypothetical protein, at 991,106 to 991,636
SMc00071
Group
Condition
SMc00006
SMc00070
SMc00007
SMc00008
SMc00071
stress
Fusidic 0.0001 mg/ml
-0.1
-6.0
N.D.
-0.1
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-4.5
-0.8
N.D.
-0.5
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-3.7
-0.1
N.D.
-0.1
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-2.4
-0.2
N.D.
+0.1
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-2.2
-0.3
N.D.
+0.4
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-1.4
-0.5
N.D.
+0.1
N.D.
carbon source
Maltitol (C)
-1.7
+0.1
N.D.
+0.0
N.D.
carbon source
Maltitol (C)
-1.8
+0.2
N.D.
+0.0
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.8
+0.4
N.D.
-0.2
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.6
+0.6
N.D.
+0.1
N.D.
stress
Nickel (II) chloride 1 mM
-2.4
+1.8
N.D.
-0.2
N.D.
carbon source
D-Arabinose (C)
-1.5
+0.5
N.D.
+0.2
N.D.
stress
copper (II) chloride 1 mM
-0.7
+1.1
N.D.
-0.3
N.D.
stress
Cisplatin 0.001 mg/ml
-0.9
+1.8
N.D.
-0.2
N.D.
stress
Chlorite 0.1 mM
-0.2
+1.4
N.D.
-0.3
N.D.
stress
Aluminum chloride
+0.7
+0.8
N.D.
-0.4
N.D.
pH
LB, pH6
-1.0
+2.7
N.D.
-0.4
N.D.
stress
Paraquat dichloride 0.05 mg/ml
-0.4
+1.8
N.D.
+0.1
N.D.
nitrogen source
L-Arginine (N)
+1.6
+0.1
N.D.
-0.0
N.D.
pH
LB, pH6
-0.7
+2.6
N.D.
-0.2
N.D.
stress
Paraquat dichloride 0.2 mg/ml
+0.5
+1.6
N.D.
-0.3
N.D.
nitrogen source
L-Asparagine (N)
+1.6
+0.1
N.D.
+0.2
N.D.
stress
Thallium(I) acetate 0.001 mg/ml
+0.9
+1.0
N.D.
-0.0
N.D.
stress
Cisplatin 0.0005 mg/ml
+0.1
+1.9
N.D.
+0.0
N.D.
stress
D-Cycloserine 0.05 mg/ml
+0.1
+2.2
N.D.
-0.1
N.D.
stress
copper (II) chloride 1 mM
+0.2
+2.3
N.D.
-0.2
N.D.
lb
LB
+0.7
+1.8
N.D.
-0.1
N.D.
lb
LB
+0.6
+2.3
N.D.
-0.4
N.D.
lb
LB
+0.6
+2.1
N.D.
-0.1
N.D.
stress
perchlorate 10 mM
-0.2
+3.5
N.D.
-0.0
N.D.
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