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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa1363 and SMa1364 are separated by 63 nucleotides
SMa1364 and SMa5008 are separated by 269 nucleotides
SMa5008 and SMa1365 are separated by 192 nucleotides
SMa1365 and SMa1367 are separated by 154 nucleotides
SMa1363: SMa1363 - ABC transporter permease, at 747,596 to 748,684
SMa1363
SMa1364: SMa1364 - ABC transporter substrate-binding protein, at 748,748 to 749,968
SMa1364
SMa5008: SMa5008 - hypothetical protein, at 750,238 to 750,459
SMa5008
SMa1365: SMa1365 - ATP-binding protein, at 750,652 to 751,026
SMa1365
SMa1367: SMa1367 - short chain alcohol dehydrogenase-related dehydrogenase, at 751,181 to 751,939
SMa1367
Group
Condition
SMa1363
SMa1364
SMa5008
SMa1365
SMa1367
nitrogen source
NAG (N)
-0.2
-0.2
-0.2
-3.8
-1.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.1
-0.3
-0.6
-3.6
+0.0
stress
Paraquat dichloride 0.3 mg/ml
+0.1
+0.3
-0.2
-4.3
-0.3
nitrogen source
Cytosine (N)
-0.2
+0.0
+0.0
-1.3
-2.1
stress
Thallium(I) acetate 0.0025 mg/ml
+0.1
-0.0
-0.2
-2.4
-0.7
r2a control
R2A control
+0.2
-0.0
-0.2
-1.8
-0.7
stress
nitrate 40 mM
+0.1
+0.1
-0.3
-1.8
-0.7
nitrogen source
L-Serine (N)
+0.1
-0.2
+0.1
-2.5
+0.1
stress
copper (II) chloride 1 mM
-0.2
+0.0
+0.3
-1.9
-0.3
stress
Thallium(I) acetate 0.001 mg/ml
-0.1
+0.0
-0.0
-1.5
-0.6
carbon source
5-Aminovaleric (C)
-0.1
+0.0
-0.1
-1.7
-0.2
nitrogen source
L-Glutamine (N)
+0.1
-0.2
-0.0
-1.6
-0.3
stress
3-octanone 0.456 mM
-0.2
-0.2
-0.3
-1.4
+0.2
stress
1-octen-3-ol 0.4933903333 mM
+0.1
-0.0
+0.2
-1.9
+0.1
carbon source
succinate (C)
+0.3
-0.0
-0.1
-1.3
-0.3
carbon source
acetate (C)
+0.1
+0.1
+0.1
-1.7
-0.1
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
+0.1
+0.1
-0.2
-1.9
+0.6
nutrient
L-Histidine
+0.2
-0.3
+0.2
-1.2
-0.1
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
+0.1
-0.2
+0.2
+0.4
-1.3
carbon source
methyl-beta-D-xylopyranoside (C)
+0.1
-0.0
+0.3
-1.5
+0.3
stress
3-octanone 5.310333333 mM
-0.0
-0.0
-0.4
+1.5
-0.4
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.2
+0.2
-0.1
+1.2
+0.2
stress
Chlorite 0.1 mM
-0.1
+0.2
+0.4
-0.2
+1.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
+0.0
+0.2
+1.3
-0.2
carbon source
Lactitol (C)
-0.0
+0.1
-0.1
+1.8
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
-0.2
+0.1
+0.8
+0.8
nutrient
Min media with glucose
+0.0
-0.1
+0.3
+1.2
+0.3
stress
Aluminum chloride
-0.2
+0.3
+0.0
+1.0
+0.6
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
-0.0
-0.1
+2.3
-0.0
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.3
+0.3
-0.2
+2.3
+0.4
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