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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa0132 and SMa0134 are separated by 110 nucleotides
SMa0134 and SMa5002 are separated by 40 nucleotides
SMa5002 and SMa0136 are separated by 247 nucleotides
SMa0136 and SMa0137 are separated by 91 nucleotides
SMa0132: SMa0132 - hypothetical protein, at 70,668 to 70,955
SMa0132
SMa0134: SMa0134 - hypothetical protein, at 71,066 to 71,671
SMa0134
SMa5002: SMa5002 - hypothetical protein, at 71,712 to 72,026
SMa5002
SMa0136: SMa0136 - hypothetical protein, at 72,274 to 74,286
SMa0136
SMa0137: SMa0137 - Diguanylate cyclase/phosphodiesterase, at 74,378 to 76,579
SMa0137
Group
Condition
SMa0132
SMa0134
SMa5002
SMa0136
SMa0137
stress
Thallium(I) acetate 0.001 mg/ml
-1.6
-0.2
-0.5
+0.0
+0.1
stress
Chlorite 0.1 mM
-1.9
-0.2
+0.6
-0.5
-0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-1.4
-0.4
+0.1
-0.2
-0.0
pH
LB, pH6
-1.4
+0.1
-0.1
+0.1
-0.2
nitrogen source
L-Leucine (N)
-0.5
-0.2
-0.5
+0.1
-0.2
nitrogen source
Uridine (N)
-0.8
+0.0
-0.8
+0.1
+0.0
temperature
LB, 23C
-0.4
-0.2
-0.3
+0.0
-0.2
stress
copper (II) chloride 1 mM
-0.2
-0.0
-0.2
-0.2
-0.5
carbon source
Protocatechuic Acid (C)
-0.9
-0.2
+0.2
-0.1
-0.0
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.5
+0.1
-0.3
-0.1
-0.1
stress
Sisomicin 0.004 mg/ml
-1.3
-0.1
+0.2
+0.1
+0.1
nitrogen source
L-Glutamine (N)
+0.1
+0.2
-0.8
-0.2
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
+0.1
-0.7
-0.2
-0.0
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.7
+0.5
-0.1
-0.3
-0.1
nitrogen source
nitrate (N)
-0.4
+0.1
-0.3
-0.2
+0.1
stress
Fusidic 0.0001 mg/ml
-0.6
+0.1
+0.1
-0.3
+0.0
r2a control
R2A control for volatile experiments
+0.2
-0.2
-0.6
-0.1
+0.0
stress
nitrate 40 mM
-0.4
-0.3
+0.4
+0.1
-0.0
nitrogen source
Cytosine (N)
+0.4
-0.1
-0.5
-0.1
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
+0.1
-0.3
-0.3
+0.1
carbon source
methyl-beta-D-xylopyranoside (C)
-0.4
+0.1
+0.4
-0.0
-0.2
carbon source
D-Glucose (C)
-0.5
+0.1
+0.6
-0.1
-0.0
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
-0.5
+0.3
+0.4
-0.1
+0.1
carbon source
Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
-0.2
+0.3
+0.5
-0.2
-0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.7
-0.2
+0.2
-0.2
-0.1
stress
Paraquat dichloride 0.3 mg/ml
-0.1
-0.1
+0.8
-0.1
-0.0
r2a control
R2A control for volatile experiments
+1.0
-0.1
+0.0
-0.2
-0.0
r2a-hepes control
R2A-HEPES control for volatile experiments
+1.0
+0.0
-0.2
+0.2
-0.0
nitrogen source
L-Arginine (N)
+0.8
+0.4
+0.0
+0.0
+0.0
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
+0.7
+0.1
+0.2
+0.2
+0.0
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