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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa2402 and SMa2404 overlap by 14 nucleotides
SMa2404 and SMa2406 overlap by 8 nucleotides
SMa2406 and SMa2408 overlap by 4 nucleotides
SMa2408 and SMa2410 overlap by 17 nucleotides
SMa2402: SMa2402 - RhsB L-2,4-diaminobutyrate decarboxylase, at 1,307,588 to 1,309,075
SMa2402
SMa2404: SMa2404 - RhbC rhizobactin biosynthesis protein, at 1,309,062 to 1,310,819
SMa2404
SMa2406: SMa2406 - RhbD rhizobactin siderophore biosynthesis protein, at 1,310,812 to 1,311,402
SMa2406
SMa2408: SMa2408 - RhbE rhizobactin siderophore biosynthesis protein, at 1,311,399 to 1,312,769
SMa2408
SMa2410: SMa2410 - RhbF rhizobactin siderophore biosynthesis protein RhsF, at 1,312,753 to 1,314,558
SMa2410
Group
Condition
SMa2402
SMa2404
SMa2406
SMa2408
SMa2410
stress
Paraquat dichloride 0.2 mg/ml
-0.3
-0.6
-0.4
-0.2
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.2
-0.2
-0.6
-0.2
-0.0
pH
LB, pH6
-0.2
-0.1
-0.3
-0.3
-0.2
lb
LB
-0.2
-0.4
-0.2
-0.2
-0.1
carbon source
Lactulose (C)
-0.4
-0.2
-0.2
-0.2
-0.0
carbon source
Maltitol (C)
-0.1
-0.3
-0.4
-0.2
-0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
-0.3
-0.3
+0.0
-0.2
stress
Chlorite 0.1 mM
+0.0
-0.2
-0.2
-0.3
-0.3
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.3
+0.1
-0.2
-0.2
-0.3
carbon source
Beta-Lactose (C)
-0.2
-0.3
-0.2
-0.2
-0.1
pH
LB, pH8
-0.2
-0.1
-0.2
-0.2
-0.2
carbon source
Lactitol (C)
-0.1
-0.3
-0.3
-0.0
-0.1
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.3
-0.5
-0.2
-0.0
-0.5
carbon source
Lactulose (C)
-0.2
-0.4
+0.0
-0.2
-0.1
nitrogen source
NAG (N)
-0.3
-0.4
-0.0
-0.2
+0.1
stress
Paraquat dichloride 0.3 mg/ml
-0.1
-0.4
-0.2
-0.1
+0.1
nitrogen source
L-Asparagine (N)
-0.4
-0.2
-0.0
-0.3
+0.2
carbon source
D-Trehalose (C)
+0.1
-0.2
-0.2
-0.2
-0.1
carbon source
Beta-Lactose (C)
-0.3
-0.4
-0.1
+0.1
-0.0
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.4
-0.1
-0.3
+0.0
+0.2
carbon source
D-Ribose (C)
-0.5
+0.1
-0.1
-0.1
+0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.4
-0.3
+0.0
+0.2
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.0
-0.3
-0.3
-0.1
+0.2
stress
Thallium(I) acetate 0.001 mg/ml
-0.1
-0.4
-0.0
-0.2
+0.3
nitrogen source
L-Arginine (N)
+0.3
-0.6
-0.1
-0.1
+0.0
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.6
+0.4
-0.0
-0.2
+0.0
carbon source
D-Fructose (C)
-0.3
-0.2
+0.0
+0.3
-0.1
stress
Sisomicin 0.004 mg/ml
-0.2
+0.1
-0.4
+0.0
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
-0.2
-0.2
+0.1
+0.4
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.2
+0.1
+0.3
-0.1
+0.1
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