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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa2361 and SMa2363 are separated by 11 nucleotides
SMa2363 and SMa2365 overlap by 4 nucleotides
SMa2365 and SMa2367 overlap by 11 nucleotides
SMa2367 and SMa2369 overlap by 4 nucleotides
SMa2361: SMa2361 - hypothetical protein, at 1,331,764 to 1,332,750
SMa2361
SMa2363: SMa2363 - amidase, at 1,332,762 to 1,334,177
SMa2363
SMa2365: SMa2365 - ABC transporter ATP-binding protein, at 1,334,174 to 1,335,700
SMa2365
SMa2367: SMa2367 - ABC transporter permease, at 1,335,690 to 1,336,739
SMa2367
SMa2369: SMa2369 - ABC transporter permease, at 1,336,736 to 1,337,680
SMa2369
Group
Condition
SMa2361
SMa2363
SMa2365
SMa2367
SMa2369
nitrogen source
L-Leucine (N)
+0.2
-0.5
-0.4
-0.4
-0.4
nitrogen source
L-Arginine (N)
-0.6
-0.3
-0.4
-0.2
-0.1
nutrient
Min media with glucose
-0.1
-0.4
-0.1
-0.3
-0.3
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.1
-0.3
-0.2
-0.4
-0.1
nitrogen source
Cytosine (N)
-0.3
-0.5
+0.1
+0.0
-0.4
stress
Thallium(I) acetate 0.0025 mg/ml
-0.1
-0.2
-0.5
-0.1
-0.2
stress
Cisplatin 0.001 mg/ml
+0.1
-0.5
-0.3
-0.2
-0.0
carbon source
L-Alanine (C)
+0.1
-0.5
-0.2
-0.0
-0.2
carbon source
methyl-beta-D-xylopyranoside (C)
-0.2
-0.5
-0.3
+0.1
+0.1
stress
Sisomicin 0.004 mg/ml
-0.4
+0.3
-0.2
-0.1
-0.2
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.4
-0.3
-0.2
-0.3
-0.2
stress
copper (II) chloride 1 mM
-0.0
-0.1
-0.3
+0.2
-0.4
carbon source
succinate (C)
-0.2
-0.7
+0.1
+0.1
+0.0
lb
LB
-0.4
-0.3
+0.0
-0.1
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.6
+0.0
+0.1
+0.2
-0.2
nutrient
L-Histidine
-0.2
+0.4
-0.1
-0.3
-0.1
nutrient
L-Lysine
-0.1
+0.4
-0.2
-0.2
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
-0.0
-0.7
+0.1
+0.4
pH
LB, pH8
-0.4
+0.3
+0.1
-0.3
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
+0.5
-0.3
-0.3
+0.3
carbon source
Protocatechuic Acid (C)
+0.0
-0.4
+0.0
+0.3
+0.2
pH
LB, pH6
+0.3
+0.3
-0.3
+0.3
-0.4
stress
3-octanone 0.456 mM
-0.1
+0.4
+0.1
+0.1
-0.2
pH
LB, pH6
-0.3
+0.2
+0.0
-0.2
+0.5
stress
Aluminum chloride
+0.1
+0.1
+0.4
-0.2
+0.2
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.2
+0.3
+0.3
+0.1
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.4
+0.8
-0.4
-0.1
+0.2
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
+0.0
+0.5
+0.1
+0.2
+0.1
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.1
+0.6
+0.1
+0.2
+0.3
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.2
+0.7
+0.3
+0.2
+0.2
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