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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa2355 and SMa2357 are separated by 1826 nucleotides
SMa2357 and SMa2359 are separated by 11 nucleotides
SMa2359 and SMa2361 are separated by 305 nucleotides
SMa2361 and SMa2363 are separated by 11 nucleotides
SMa2355: SMa2355 - DNA polymerase IV, at 1,327,042 to 1,328,151
SMa2355
SMa2357: SMa2357 - guanylate cyclase, at 1,329,978 to 1,330,670
SMa2357
SMa2359: SMa2359 - hypothetical protein, at 1,330,682 to 1,331,458
SMa2359
SMa2361: SMa2361 - hypothetical protein, at 1,331,764 to 1,332,750
SMa2361
SMa2363: SMa2363 - amidase, at 1,332,762 to 1,334,177
SMa2363
Group
Condition
SMa2355
SMa2357
SMa2359
SMa2361
SMa2363
nitrogen source
Cytosine (N)
-0.2
+0.0
-0.7
-0.3
-0.5
nitrogen source
L-Arginine (N)
+0.0
-0.4
-0.3
-0.6
-0.3
carbon source
succinate (C)
+0.0
-0.2
-0.2
-0.2
-0.7
stress
Paraquat dichloride 0.2 mg/ml
+0.0
-0.4
-0.4
-0.4
-0.1
lb
LB
-0.1
-0.0
-0.2
-0.4
-0.3
lb
LB
+0.0
-0.3
-0.5
-0.0
-0.2
stress
Cisplatin 0.001 mg/ml
-0.2
-0.2
-0.2
+0.1
-0.5
nitrogen source
L-Asparagine (N)
-0.6
-0.0
+0.1
+0.1
-0.6
stress
Cisplatin 0.0005 mg/ml
-0.2
-0.4
-0.4
-0.1
+0.2
nitrogen source
L-Glutamine (N)
-0.4
+0.2
+0.1
-0.1
-0.6
stress
nitrite 20 mM
-0.4
-0.3
-0.2
-0.1
+0.1
r2a control
R2A control
+0.0
-0.4
-0.4
-0.3
+0.4
pH
LB, pH8
-0.3
+0.0
-0.2
-0.4
+0.3
stress
perchlorate 10 mM
-0.6
+0.0
+0.2
+0.1
-0.2
nitrogen source
L-Leucine (N)
-0.3
+0.3
-0.1
+0.2
-0.5
carbon source
D-Arabinose (C)
+0.2
+0.2
-0.2
-0.2
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
+0.4
-0.1
-0.2
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
-0.3
+0.4
+0.2
-0.2
stress
Sisomicin 0.004 mg/ml
+0.2
+0.1
-0.2
-0.4
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
-0.4
+0.1
+0.0
+0.4
pH
LB, pH6
-0.2
-0.3
+0.1
+0.3
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
+0.6
-0.0
+0.2
-0.4
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.5
+0.4
+0.0
+0.2
+0.1
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.1
+0.4
+0.1
+0.4
-0.3
stress
1-octen-3-ol 0.5427293333 mM
-0.3
+0.2
+0.2
+0.3
+0.2
carbon source
succinate (C)
+0.2
+0.2
+0.3
+0.2
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
+0.4
+0.1
-0.1
+0.5
r2a control
R2A control for volatile experiments
+0.5
+0.6
+0.1
-0.0
+0.1
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.1
-0.0
+0.3
+0.2
+0.7
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
+0.3
+0.1
+0.4
+0.8
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