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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa2295 and SMa2297 are separated by 404 nucleotides
SMa2297 and SMa2299 are separated by 61 nucleotides
SMa2299 and SMa2301 are separated by 304 nucleotides
SMa2301 and SMa2303 are separated by 83 nucleotides
SMa2295: SMa2295 - penicillin-binding protein, at 1,278,152 to 1,279,483
SMa2295
SMa2297: SMa2297 - hypothetical protein, at 1,279,888 to 1,280,700
SMa2297
SMa2299: SMa2299 - hypothetical protein, at 1,280,762 to 1,281,688
SMa2299
SMa2301: SMa2301 - Diguanylate cyclase, at 1,281,993 to 1,283,339
SMa2301
SMa2303: SMa2303 - ROK family transcriptional regulator, at 1,283,423 to 1,284,649
SMa2303
Group
Condition
SMa2295
SMa2297
SMa2299
SMa2301
SMa2303
nitrogen source
L-Leucine (N)
-0.3
-0.1
-1.6
-0.2
-0.3
stress
copper (II) chloride 1 mM
-0.3
-0.2
-1.4
-0.2
-0.3
carbon source
L-Fucose (C)
-0.1
-0.5
-0.7
-0.4
-0.5
lb
LB
-0.2
-0.1
-1.4
-0.1
+0.0
nitrogen source
L-Arginine (N)
+0.1
-0.5
-1.5
+0.1
-0.0
carbon source
D-Mannitol (C)
-0.2
-0.4
-0.8
-0.2
-0.3
lb
LB
-0.1
-0.1
-1.1
-0.4
-0.0
carbon source
acetate (C)
-0.1
-0.1
-1.0
-0.0
-0.3
carbon source
acetate (C)
-0.2
-0.3
-0.4
-0.3
-0.3
carbon source
D-Ribose (C)
-0.2
-0.1
-0.5
-0.5
-0.3
pH
LB, pH6
-0.3
-0.2
-0.4
-0.5
-0.1
carbon source
Protocatechuic Acid (C)
-0.0
-0.2
-0.6
-0.2
-0.3
stress
Cisplatin 0.0005 mg/ml
-0.2
-0.0
-0.6
-0.3
-0.2
stress
nitrate 40 mM
-0.3
+0.0
-0.7
-0.2
-0.2
nitrogen source
Cytosine (N)
-0.3
-0.4
-0.4
-0.1
-0.2
stress
Chloride 200 mM
-0.2
-0.1
-0.5
-0.3
-0.3
carbon source
pipercolic (C)
-0.0
-0.3
-0.6
-0.1
-0.3
stress
Chlorite 0.1 mM
-0.2
-0.1
-0.9
+0.0
+0.1
stress
Aluminum chloride
+0.2
-0.3
-0.7
+0.2
-0.2
nitrogen source
NAG (N)
-0.2
-0.5
+0.3
-0.1
-0.3
carbon source
Myristic (C)
-0.1
-0.4
+0.5
-0.3
-0.3
carbon source
D-Glucose (C)
+0.1
+0.4
-0.8
+0.0
-0.3
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.1
-0.1
+0.5
-0.3
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
-0.1
+0.9
-0.6
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
+0.4
+0.3
+0.0
-0.2
nitrogen source
L-Serine (N)
-0.1
-0.2
+1.0
-0.1
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.4
+0.3
+0.5
-0.2
+0.1
carbon source
D-Arabinose (C)
-0.0
-0.0
-0.6
-0.1
+1.8
carbon source
Lactitol (C)
+0.0
-0.1
-0.3
-0.0
+8.5
carbon source
Lactitol (C)
+0.0
-0.2
+0.0
+0.1
+8.6
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