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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa2265 and SMa2267 are separated by 75 nucleotides
SMa2267 and SMa2269 are separated by 182 nucleotides
SMa2269 and SMa2273 are separated by 308 nucleotides
SMa2273 and SMa2275 overlap by 20 nucleotides
SMa2265: SMa2265 - hypothetical protein, at 1,266,850 to 1,267,101
SMa2265
SMa2267: SMa2267 - hypothetical protein, at 1,267,177 to 1,267,614
SMa2267
SMa2269: SMa2269 - hypothetical protein, at 1,267,797 to 1,268,162
SMa2269
SMa2273: SMa2273 - hypothetical protein, at 1,268,471 to 1,268,821
SMa2273
SMa2275: SMa2275 - hypothetical protein, at 1,268,802 to 1,269,077
SMa2275
Group
Condition
SMa2265
SMa2267
SMa2269
SMa2273
SMa2275
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-1.3
-0.5
-0.3
+0.0
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.3
-0.1
-0.2
-0.5
N.D.
stress
perchlorate 10 mM
-0.3
-0.5
-0.4
+0.1
N.D.
pH
LB, pH8
-0.6
-0.2
-0.2
-0.1
N.D.
nitrogen source
L-Arginine (N)
+0.0
-0.5
-0.7
+0.2
N.D.
temperature
LB, 23C
-0.0
-0.3
-0.5
-0.2
N.D.
stress
copper (II) chloride 1 mM
-1.1
-0.2
+0.0
+0.2
N.D.
pH
LB, pH8
-0.2
-0.0
-0.7
-0.1
N.D.
carbon source
L-Fucose (C)
+0.0
-0.2
-0.4
-0.4
N.D.
temperature
LB, 30C
-0.1
-0.2
-0.4
-0.2
N.D.
dmso control
DMSO control
-0.4
-0.1
-0.3
-0.1
N.D.
lb
LB
-0.1
+0.0
-0.6
-0.2
N.D.
stress
Thallium(I) acetate 0.0025 mg/ml
-0.4
+0.1
-0.2
-0.4
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.4
+0.0
-0.5
+0.1
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.5
+0.1
-0.1
-0.3
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
-0.6
+0.2
-0.3
N.D.
nitrogen source
L-Leucine (N)
-0.3
-0.3
+0.2
-0.3
N.D.
stress
3-octanone 5.310333333 mM
-0.5
+0.1
-0.1
-0.3
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.4
+0.0
-0.5
+0.2
N.D.
temperature
LB, 23C
-0.4
+0.1
-0.3
+0.1
N.D.
nitrogen source
Gly-DL-Asp (N)
+0.5
-0.5
-0.3
-0.2
N.D.
stress
Paraquat dichloride 0.2 mg/ml
-0.4
-0.3
-0.2
+0.4
N.D.
nutrient
Min media with glucose
-0.5
-0.2
+0.3
+0.0
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
-0.2
+0.5
-0.5
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
-0.2
+0.3
-0.3
N.D.
nitrogen source
L-Asparagine (N)
+0.8
-0.2
-0.5
-0.1
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.5
+0.1
-0.2
-0.3
N.D.
stress
Nickel (II) chloride 1 mM
+0.6
+0.1
-0.0
-0.5
N.D.
carbon source
Lactitol (C)
+0.3
+0.2
+0.3
-0.1
N.D.
stress
Thallium(I) acetate 0.001 mg/ml
+0.1
+0.2
+0.4
+0.2
N.D.
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