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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa2249 and SMa2251 overlap by 4 nucleotides
SMa2251 and SMa2253 are separated by 957 nucleotides
SMa2253 and SMa2255 are separated by 2 nucleotides
SMa2255 and SMa2257 overlap by 4 nucleotides
SMa2249: SMa2249 - hypothetical protein, at 1,260,671 to 1,261,777
SMa2249
SMa2251: SMa2251 - hypothetical protein, at 1,261,774 to 1,262,337
SMa2251
SMa2253: SMa2253 - hypothetical protein, at 1,263,295 to 1,263,672
SMa2253
SMa2255: SMa2255 - hypothetical protein, at 1,263,675 to 1,264,013
SMa2255
SMa2257: SMa2257 - integrase-like protein, at 1,264,010 to 1,265,167
SMa2257
Group
Condition
SMa2249
SMa2251
SMa2253
SMa2255
SMa2257
nitrogen source
Cytosine (N)
-0.0
-0.0
-4.3
+0.1
-0.1
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.0
+0.0
-2.6
-0.5
-0.2
r2a control
R2A control for volatile experiments
-0.1
-0.6
-2.3
+0.2
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
+0.3
-3.1
+0.0
+0.1
nitrogen source
Gly-DL-Asp (N)
-0.0
-0.0
-1.7
-0.6
-0.1
stress
Cisplatin 0.0005 mg/ml
+0.0
+0.1
-2.1
+0.4
-0.3
nitrogen source
L-Histidine (N)
+0.0
+0.4
-0.9
-0.7
-0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.0
+0.3
-2.0
-0.0
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.6
+0.6
-1.3
+0.0
+0.0
stress
1-octen-3-ol 0.4933903333 mM
-0.1
-1.3
-0.3
+0.3
+0.1
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
-0.0
-1.7
+0.4
+0.1
+0.2
r2a control
R2A control for volatile experiments
-0.2
-1.4
+0.6
-0.1
+0.1
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.1
-1.3
+0.2
-0.3
+0.4
dmso control
DMSO control
-0.1
-0.7
+0.5
-0.4
+0.1
stress
copper (II) chloride 1 mM
+0.0
+0.6
-1.0
+0.1
-0.1
r2a control
R2A control for volatile experiments
-0.2
-1.1
+1.1
+0.0
-0.2
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.1
-0.6
+0.9
-0.1
-0.4
nutrient
L-Histidine
+0.1
+0.4
-0.9
+0.2
+0.1
r2a control
R2A control for volatile experiments
-0.0
-0.7
+1.1
-0.3
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.0
+1.0
-0.7
-0.2
+0.2
nitrogen source
Uridine (N)
+0.3
+0.5
-0.7
+0.2
+0.0
stress
6-Pentyl-2H-pyran-2-one 0.4557668333 mM
-0.2
-0.4
+1.0
+0.0
+0.0
stress
3-octanone 0.456 mM
-0.2
+0.3
+0.7
+0.3
-0.3
stress
Thallium(I) acetate 0.0025 mg/ml
+0.3
+1.0
+0.0
-0.3
-0.3
stress
Thallium(I) acetate 0.001 mg/ml
+0.2
+0.4
+0.8
-0.1
-0.4
stress
Paraquat dichloride 0.2 mg/ml
+0.7
-0.1
-0.2
+0.5
+0.4
stress
D-Cycloserine 0.05 mg/ml
-0.2
+0.4
+0.9
+0.1
+0.1
lb
LB
+0.1
+0.7
+1.0
+0.2
-0.2
stress
perchlorate 10 mM
+0.2
+0.7
+0.7
+0.5
+0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.2
+0.9
+2.0
+0.5
+0.0
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