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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa2131 and SMa2133 are separated by 169 nucleotides
SMa2133 and SMa2135 are separated by 141 nucleotides
SMa2135 and SMa2137 are separated by 71 nucleotides
SMa2137 and SMa2139 overlap by 4 nucleotides
SMa2131: SMa2131 - hypothetical protein, at 1,204,556 to 1,205,452
SMa2131
SMa2133: SMa2133 - hypothetical protein, at 1,205,622 to 1,206,413
SMa2133
SMa2135: SMa2135 - GlyA2 serine hydroxymethyltransferase, SHMT, at 1,206,555 to 1,207,823
SMa2135
SMa2137: SMa2137 - dehydrogenase, at 1,207,895 to 1,208,869
SMa2137
SMa2139: SMa2139 - SgaA serine-glyoxylate aminotransferase (SGAT), at 1,208,866 to 1,210,071
SMa2139
Group
Condition
SMa2131
SMa2133
SMa2135
SMa2137
SMa2139
r2a control
R2A control for volatile experiments
-0.4
-0.2
-0.3
-0.4
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.0
-0.4
+0.0
-0.3
-0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
-0.1
-0.5
-0.5
-0.1
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.3
-0.1
-0.0
-0.4
-0.1
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.6
-0.3
-0.2
+0.1
-0.1
nutrient
L-Lysine
-0.2
+0.1
-0.2
-0.3
-0.1
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.7
+0.1
-0.2
-0.1
+0.0
nitrogen source
L-Histidine (N)
+0.2
-0.3
-0.6
-0.3
+0.1
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.2
-0.2
-0.2
-0.3
+0.2
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.6
+0.1
+0.1
-0.0
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.0
-0.3
-0.7
+0.2
+0.2
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.4
-0.1
+0.0
-0.3
+0.2
stress
3-octanone 0.456 mM
-0.3
+0.1
+0.3
-0.3
-0.3
stress
1-octen-3-ol 0.5427293333 mM
+0.3
-0.3
+0.0
-0.2
-0.3
carbon source
5-Aminovaleric (C)
-0.4
-0.3
+0.1
+0.3
+0.0
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.1
-0.2
+0.1
-0.3
+0.3
stress
1-octen-3-ol 0.4933903333 mM
-0.2
-0.2
+0.2
+0.2
-0.1
carbon source
D-Xylose (C)
-0.3
-0.1
+0.2
+0.2
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
+0.2
-0.4
+0.4
-0.3
nitrogen source
L-Arginine (N)
+0.2
+0.1
-0.1
-0.4
+0.2
stress
Cisplatin 0.001 mg/ml
+0.0
+0.2
+0.4
-0.1
-0.4
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.3
-0.0
+0.3
-0.1
+0.3
carbon source
Mannobiose (C)
-0.3
-0.1
+0.2
+0.2
+0.3
stress
Thallium(I) acetate 0.0025 mg/ml
+0.4
+0.1
-0.0
-0.3
+0.2
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.4
+0.1
-0.4
+0.1
+0.3
stress
Nickel (II) chloride 1 mM
+0.2
+0.5
-0.0
+0.1
-0.3
stress
3-octanone 5.310333333 mM
-0.1
-0.2
+0.3
+0.3
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
+0.1
+0.2
+0.3
+0.3
stress
nitrate 40 mM
+0.0
+0.4
+0.6
-0.0
+0.0
nitrogen source
L-Leucine (N)
+0.5
+0.3
-0.2
+0.5
+0.2
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