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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa2129 and SMa2131 are separated by 245 nucleotides
SMa2131 and SMa2133 are separated by 169 nucleotides
SMa2133 and SMa2135 are separated by 141 nucleotides
SMa2135 and SMa2137 are separated by 71 nucleotides
SMa2129: SMa2129 - hypothetical protein, at 1,203,291 to 1,204,310
SMa2129
SMa2131: SMa2131 - hypothetical protein, at 1,204,556 to 1,205,452
SMa2131
SMa2133: SMa2133 - hypothetical protein, at 1,205,622 to 1,206,413
SMa2133
SMa2135: SMa2135 - GlyA2 serine hydroxymethyltransferase, SHMT, at 1,206,555 to 1,207,823
SMa2135
SMa2137: SMa2137 - dehydrogenase, at 1,207,895 to 1,208,869
SMa2137
Group
Condition
SMa2129
SMa2131
SMa2133
SMa2135
SMa2137
r2a control
R2A control for volatile experiments
-0.1
-0.4
-0.2
-0.3
-0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
+0.1
-0.1
-0.5
-0.5
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.2
-0.6
-0.3
-0.2
+0.1
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.2
-0.7
+0.1
-0.2
-0.1
carbon source
acetate (C)
-0.4
+0.0
-0.2
-0.3
-0.1
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.3
-0.2
-0.2
+0.0
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
+0.0
-0.3
-0.7
+0.2
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.3
-0.4
-0.0
-0.1
+0.1
carbon source
D-Mannitol (C)
-0.1
-0.3
+0.2
-0.2
-0.3
nitrogen source
L-Histidine (N)
+0.3
+0.2
-0.3
-0.6
-0.3
stress
1-octen-3-ol 0.5427293333 mM
-0.4
+0.3
-0.3
+0.0
-0.2
carbon source
Xylobiose (C)
+0.3
-0.3
-0.1
-0.1
-0.2
nitrogen source
NAG (N)
-0.2
+0.3
-0.0
-0.3
-0.2
nitrogen source
L-Arginine (N)
-0.3
+0.2
+0.1
-0.1
-0.4
pH
LB, pH8
+0.4
-0.1
-0.0
-0.4
-0.2
stress
3-octanone 0.456 mM
+0.0
-0.3
+0.1
+0.3
-0.3
carbon source
5-Aminovaleric (C)
+0.1
-0.4
-0.3
+0.1
+0.3
nitrogen source
Cytosine (N)
-0.4
-0.1
-0.2
+0.3
+0.2
stress
3-octanone 5.310333333 mM
-0.2
-0.1
-0.2
+0.3
+0.3
stress
3-octanone 5.310333333 mM
-0.1
+0.2
+0.1
+0.3
-0.3
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.1
+0.4
+0.1
-0.4
+0.1
pH
LB, pH8
+0.5
+0.0
+0.1
+0.1
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
+0.3
+0.2
-0.4
+0.4
stress
Paraquat dichloride 0.2 mg/ml
+0.4
-0.1
+0.1
-0.2
+0.2
stress
perchlorate 10 mM
+0.7
-0.5
+0.3
+0.0
+0.0
lb
LB
+0.4
-0.2
+0.1
+0.3
-0.1
stress
Paraquat dichloride 0.2 mg/ml
+0.3
+0.3
+0.2
+0.0
-0.1
nitrogen source
L-Leucine (N)
+0.1
+0.5
+0.3
-0.2
+0.5
stress
nitrate 40 mM
+0.4
+0.0
+0.4
+0.6
-0.0
lb
LB
+0.7
+0.2
+0.1
+0.4
-0.0
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