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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa2127 and SMa2129 are separated by 32 nucleotides
SMa2129 and SMa2131 are separated by 245 nucleotides
SMa2131 and SMa2133 are separated by 169 nucleotides
SMa2133 and SMa2135 are separated by 141 nucleotides
SMa2127: SMa2127 - ABC transporter ATP-binding protein, at 1,201,708 to 1,203,258
SMa2127
SMa2129: SMa2129 - hypothetical protein, at 1,203,291 to 1,204,310
SMa2129
SMa2131: SMa2131 - hypothetical protein, at 1,204,556 to 1,205,452
SMa2131
SMa2133: SMa2133 - hypothetical protein, at 1,205,622 to 1,206,413
SMa2133
SMa2135: SMa2135 - GlyA2 serine hydroxymethyltransferase, SHMT, at 1,206,555 to 1,207,823
SMa2135
Group
Condition
SMa2127
SMa2129
SMa2131
SMa2133
SMa2135
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.1
-0.2
-0.6
-0.3
-0.2
r2a control
R2A control for volatile experiments
-0.6
-0.2
-0.0
-0.0
-0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
-0.1
+0.0
-0.3
-0.7
r2a control
R2A control for volatile experiments
-0.2
-0.1
-0.4
-0.2
-0.3
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.1
-0.2
-0.6
-0.1
-0.0
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
+0.0
-0.2
-0.7
+0.1
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.5
-0.1
+0.0
-0.4
+0.0
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.1
-0.3
-0.4
-0.0
-0.1
carbon source
acetate (C)
+0.1
-0.4
+0.0
-0.2
-0.3
carbon source
Xylobiose (C)
-0.3
+0.3
-0.3
-0.1
-0.1
carbon source
Protocatechuic Acid (C)
+0.2
-0.2
-0.4
+0.1
-0.2
stress
1-octen-3-ol 0.5427293333 mM
-0.2
-0.4
+0.3
-0.3
+0.0
stress
1-octen-3-ol 0.4933903333 mM
-0.2
-0.1
-0.2
-0.2
+0.2
nitrogen source
NAG (N)
-0.2
-0.2
+0.3
-0.0
-0.3
stress
3-octanone 5.310333333 mM
-0.2
-0.2
-0.1
-0.2
+0.3
nitrogen source
L-Histidine (N)
+0.0
+0.3
+0.2
-0.3
-0.6
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
+0.1
-0.0
-0.3
-0.4
nitrogen source
Cytosine (N)
+0.1
-0.4
-0.1
-0.2
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
+0.5
-0.0
-0.1
-0.2
stress
Cisplatin 0.001 mg/ml
-0.3
-0.1
+0.0
+0.2
+0.4
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.1
+0.1
+0.4
+0.1
-0.4
nitrogen source
L-Arginine (N)
+0.3
-0.3
+0.2
+0.1
-0.1
stress
Paraquat dichloride 0.2 mg/ml
+0.2
+0.4
-0.1
+0.1
-0.2
dmso control
DMSO control
-0.1
-0.2
+0.3
+0.0
+0.4
lb
LB
-0.0
+0.4
-0.2
+0.1
+0.3
nitrogen source
L-Leucine (N)
+0.1
+0.1
+0.5
+0.3
-0.2
stress
perchlorate 10 mM
+0.2
+0.7
-0.5
+0.3
+0.0
stress
Nickel (II) chloride 1 mM
+0.2
-0.1
+0.2
+0.5
-0.0
lb
LB
+0.0
+0.7
+0.2
+0.1
+0.4
stress
nitrate 40 mM
+0.4
+0.4
+0.0
+0.4
+0.6
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