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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa2125 and SMa2127 overlap by 32 nucleotides
SMa2127 and SMa2129 are separated by 32 nucleotides
SMa2129 and SMa2131 are separated by 245 nucleotides
SMa2131 and SMa2133 are separated by 169 nucleotides
SMa2125: SMa2125 - ABC transporter permease, at 1,200,660 to 1,201,739
SMa2125
SMa2127: SMa2127 - ABC transporter ATP-binding protein, at 1,201,708 to 1,203,258
SMa2127
SMa2129: SMa2129 - hypothetical protein, at 1,203,291 to 1,204,310
SMa2129
SMa2131: SMa2131 - hypothetical protein, at 1,204,556 to 1,205,452
SMa2131
SMa2133: SMa2133 - hypothetical protein, at 1,205,622 to 1,206,413
SMa2133
Group
Condition
SMa2125
SMa2127
SMa2129
SMa2131
SMa2133
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.2
-0.1
-0.2
-0.6
-0.3
r2a control
R2A control for volatile experiments
-0.3
-0.2
-0.1
-0.4
-0.2
stress
3-octanone 5.310333333 mM
-0.5
-0.2
-0.2
-0.1
-0.2
r2a control
R2A control for volatile experiments
-0.4
-0.6
-0.2
-0.0
-0.0
r2a control
R2A control for volatile experiments
-0.4
-0.3
-0.3
-0.1
+0.0
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.1
-0.1
-0.2
-0.6
-0.1
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.2
-0.1
-0.3
-0.2
-0.2
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.3
+0.1
-0.3
-0.4
-0.0
stress
6-Pentyl-2H-pyran-2-one 0.4557668333 mM
-0.2
-0.0
-0.1
-0.4
-0.2
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.4
+0.2
-0.2
-0.4
-0.0
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.1
+0.0
-0.2
-0.7
+0.1
stress
1-octen-3-ol 0.5427293333 mM
-0.2
-0.2
-0.4
+0.3
-0.3
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.3
+0.1
-0.2
-0.3
+0.1
carbon source
D-Mannitol (C)
-0.3
+0.1
-0.1
-0.3
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.5
-0.5
-0.1
+0.0
-0.4
carbon source
Xylobiose (C)
+0.1
-0.3
+0.3
-0.3
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.6
+0.2
-0.2
+0.2
+0.0
stress
Cisplatin 0.0005 mg/ml
-0.5
+0.5
-0.1
-0.0
+0.1
nitrogen source
L-Arginine (N)
-0.4
+0.3
-0.3
+0.2
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
+0.1
+0.2
-0.4
-0.1
nutrient
L-Lysine
+0.5
-0.3
+0.1
-0.2
+0.1
nitrogen source
NAG (N)
+0.4
-0.2
-0.2
+0.3
-0.0
stress
nitrate 40 mM
-0.7
+0.4
+0.4
+0.0
+0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
-0.2
+0.5
-0.0
-0.1
stress
perchlorate 10 mM
-0.1
+0.2
+0.7
-0.5
+0.3
stress
Nickel (II) chloride 1 mM
-0.2
+0.2
-0.1
+0.2
+0.5
stress
Thallium(I) acetate 0.0025 mg/ml
-0.2
+0.3
+0.1
+0.4
+0.1
nitrogen source
L-Leucine (N)
-0.1
+0.1
+0.1
+0.5
+0.3
stress
Aluminum chloride
+0.5
+0.4
-0.0
-0.1
+0.1
lb
LB
+0.1
+0.0
+0.7
+0.2
+0.1
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