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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa2113 and SMa2115 are separated by 48 nucleotides
SMa2115 and SMa2117 are separated by 11 nucleotides
SMa2117 and SMa2119 are separated by 42 nucleotides
SMa2119 and SMa2121 are separated by 15 nucleotides
SMa2113: SMa2113 - glutathione-dependent dehydrogenase, at 1,193,878 to 1,195,005
SMa2113
SMa2115: SMa2115 - Gst13 glutathione S-transferase, at 1,195,054 to 1,195,701
SMa2115
SMa2117: SMa2117 - oxidoreductase, at 1,195,713 to 1,197,479
SMa2117
SMa2119: SMa2119 - hypothetical protein, at 1,197,522 to 1,198,448
SMa2119
SMa2121: SMa2121 - hypothetical protein, at 1,198,464 to 1,199,327
SMa2121
Group
Condition
SMa2113
SMa2115
SMa2117
SMa2119
SMa2121
carbon source
acetate (C)
-0.4
-0.7
-0.4
-0.3
+0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-1.0
-0.6
-0.3
+0.7
-0.1
pH
LB, pH6
-0.7
-0.2
-0.0
-0.3
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.3
-0.6
-0.4
+0.2
-0.3
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.6
+0.1
-0.1
-0.4
-0.1
nitrogen source
L-Arginine (N)
-0.3
-0.4
-0.2
-0.2
+0.0
nitrogen source
L-Histidine (N)
-0.5
-0.0
-0.8
-0.0
+0.3
nitrogen source
Cytosine (N)
-0.0
-0.7
-0.4
+0.4
-0.2
carbon source
Protocatechuic Acid (C)
-0.5
-0.3
-0.1
-0.2
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.5
-0.2
+0.0
+0.3
-0.3
stress
3-octanone 0.456 mM
+0.2
+0.0
-0.1
-0.7
-0.2
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.2
-0.2
-0.0
-0.3
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
-0.3
-0.6
+0.3
-0.2
stress
6-Pentyl-2H-pyran-2-one 0.4557668333 mM
+0.3
-0.2
+0.1
-0.4
-0.3
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
+0.3
+0.1
-0.2
-0.3
-0.3
stress
1-octen-3-ol 0.5427293333 mM
+0.3
+0.0
+0.1
-0.5
-0.3
stress
1-octen-3-ol 0.5427293333 mM
+0.4
+0.0
+0.2
-0.6
-0.2
stress
1-octen-3-ol 0.6030326667 mM
+0.2
+0.3
-0.0
-0.6
-0.1
r2a control
R2A control for volatile experiments
-0.1
+0.4
+0.1
-0.5
-0.1
stress
1-octen-3-ol 0.5427293333 mM
+0.4
+0.2
-0.1
-0.2
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.5
-0.2
+0.2
+0.6
-0.1
stress
3-octanone 2.655166667 mM
+0.4
+0.2
-0.0
-0.2
-0.4
stress
Aluminum chloride
-0.1
-0.7
+0.2
+0.5
+0.1
stress
1-octen-3-ol 0.4933903333 mM
+0.5
-0.1
+0.1
-0.3
-0.2
stress
Cisplatin 0.0005 mg/ml
-0.3
+0.5
-0.2
-0.1
+0.2
stress
Paraquat dichloride 0.2 mg/ml
-0.3
+0.3
+0.1
+0.3
+0.2
stress
Cisplatin 0.001 mg/ml
+0.3
+0.3
-0.1
-0.1
+0.4
stress
Nickel (II) chloride 1 mM
+0.4
+0.4
+0.1
-0.1
+0.1
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.3
-0.0
+0.3
+0.6
+0.4
nutrient
Min media with glucose
+0.7
-0.1
+0.3
+0.1
+0.2
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