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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa2105 and SMa2107 are separated by 128 nucleotides
SMa2107 and SMa2109 are separated by 94 nucleotides
SMa2109 and SMa2111 are separated by 807 nucleotides
SMa2111 and SMa2113 are separated by 564 nucleotides
SMa2105: SMa2105 - hypothetical protein, at 1,187,704 to 1,188,924
SMa2105
SMa2107: SMa2107 - GstR transcriptional regulator, at 1,189,053 to 1,189,958
SMa2107
SMa2109: SMa2109 - hypothetical protein, at 1,190,053 to 1,190,955
SMa2109
SMa2111: SMa2111 - hypothetical protein, at 1,191,763 to 1,193,313
SMa2111
SMa2113: SMa2113 - glutathione-dependent dehydrogenase, at 1,193,878 to 1,195,005
SMa2113
Group
Condition
SMa2105
SMa2107
SMa2109
SMa2111
SMa2113
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.4
-0.3
+0.3
+0.1
-1.0
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.3
-0.2
+0.0
-0.1
-0.6
r2a control
R2A control for volatile experiments
-0.3
+0.2
-0.2
-0.2
-0.3
stress
Aluminum chloride
+0.3
-0.3
-0.5
-0.1
-0.1
stress
copper (II) chloride 1 mM
-0.7
+0.0
-0.3
+0.0
+0.2
r2a control
R2A control for volatile experiments
+0.1
-0.3
+0.1
-0.4
-0.2
stress
Chlorite 0.1 mM
+0.0
+0.3
-0.2
-0.2
-0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.4
-0.2
-0.5
-0.1
-0.3
stress
6-Pentyl-2H-pyran-2-one 0.4557668333 mM
-0.2
-0.2
-0.3
-0.1
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
+0.0
+0.4
+0.0
-0.5
carbon source
Protocatechuic Acid (C)
+0.2
+0.2
-0.1
-0.1
-0.5
nitrogen source
L-Histidine (N)
+0.3
-0.3
+0.2
+0.0
-0.5
nitrogen source
L-Asparagine (N)
+0.2
+0.2
-0.4
+0.0
-0.3
stress
Cisplatin 0.0005 mg/ml
+0.3
-0.4
+0.2
-0.1
-0.3
pH
LB, pH6
+0.5
-0.0
+0.1
+0.0
-0.7
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.0
+0.1
+0.3
+0.1
-0.6
carbon source
L-Arabinose (C)
+0.3
+0.3
-0.0
+0.0
-0.6
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.3
+0.1
+0.3
-0.3
-0.3
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.2
+0.1
+0.3
-0.3
+0.2
carbon source
D-Mannose (C)
+0.5
+0.3
-0.2
-0.1
-0.1
carbon source
Lactitol (C)
+0.3
+0.2
+0.2
+0.0
-0.4
carbon source
D-Glucosamine Hydrochloride (C)
+0.4
+0.3
-0.2
+0.2
-0.0
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.3
+0.2
+0.6
-0.2
-0.3
stress
Nickel (II) chloride 1 mM
+0.3
+0.3
-0.2
+0.0
+0.4
carbon source
L-Fucose (C)
+0.4
+0.1
-0.2
+0.1
+0.4
nitrogen source
L-Arginine (N)
+0.3
+0.2
+0.3
+0.5
-0.3
nutrient
Min media with glucose
+0.2
+0.3
-0.2
-0.0
+0.7
nutrient
L-Histidine
+0.4
-0.0
+0.2
+0.1
+0.6
lb
LB
+0.5
+0.2
+0.4
+0.0
+0.2
stress
Paraquat dichloride 0.2 mg/ml
+0.3
+0.0
+0.4
+0.2
+0.5
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