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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa2099 and SMa2101 are separated by 15 nucleotides
SMa2101 and SMa2103 are separated by 125 nucleotides
SMa2103 and SMa2105 are separated by 456 nucleotides
SMa2105 and SMa2107 are separated by 128 nucleotides
SMa2099: SMa2099 - NAD-dependent epimerase/dehydratase, at 1,183,832 to 1,184,482
SMa2099
SMa2101: SMa2101 - nitrilotriacetate monooxygenase component A, at 1,184,498 to 1,185,799
SMa2101
SMa2103: SMa2103 - oxidoreductase, at 1,185,925 to 1,187,247
SMa2103
SMa2105: SMa2105 - hypothetical protein, at 1,187,704 to 1,188,924
SMa2105
SMa2107: SMa2107 - GstR transcriptional regulator, at 1,189,053 to 1,189,958
SMa2107
Group
Condition
SMa2099
SMa2101
SMa2103
SMa2105
SMa2107
stress
copper (II) chloride 1 mM
-0.3
-0.3
+0.0
-0.7
+0.0
r2a control
R2A control for volatile experiments
-0.3
-0.3
+0.1
-0.7
-0.0
stress
Cisplatin 0.001 mg/ml
-0.5
-0.5
-0.4
+0.3
+0.1
stress
Sisomicin 0.004 mg/ml
-0.2
-0.1
-0.5
-0.5
+0.3
stress
Cisplatin 0.0005 mg/ml
-0.1
-0.5
-0.1
+0.3
-0.4
nutrient
L-Lysine
-0.6
-0.1
-0.2
+0.3
-0.0
stress
Nickel (II) chloride 1 mM
-0.5
-0.2
-0.4
+0.3
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.1
-0.7
-0.4
+0.2
+0.2
nutrient
Min media with glucose
-0.5
-0.2
-0.2
+0.3
+0.2
stress
Thallium(I) acetate 0.001 mg/ml
-0.4
-0.2
-0.3
+0.3
+0.1
r2a control
R2A control for volatile experiments
+0.4
-0.4
+0.2
-0.2
-0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.7
+0.1
-0.1
+0.2
+0.1
nitrogen source
Gelatin (N)
+0.2
-0.2
-0.2
+0.2
-0.3
carbon source
D,L-Lactate (C)
-0.4
-0.2
-0.1
+0.4
+0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.5
-0.4
-0.2
-0.2
+0.0
stress
Paraquat dichloride 0.2 mg/ml
-0.5
-0.3
+0.1
+0.3
+0.1
stress
Aluminum chloride
-0.2
-0.2
+0.2
+0.3
-0.3
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.2
-0.2
+0.6
-0.0
-0.2
lb
LB
-0.4
-0.1
-0.1
+0.5
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.6
-0.1
-0.0
-0.4
+0.1
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.1
-0.2
+0.5
+0.3
+0.1
lb no stress control
LB no stress control
+0.2
+0.4
+0.3
-0.0
-0.2
stress
perchlorate 10 mM
-0.3
+0.3
+0.1
+0.6
-0.0
carbon source
L-Lysine (C)
-0.2
+0.4
-0.1
+0.2
+0.4
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.3
+0.2
+0.3
+0.3
+0.2
stress
D-Cycloserine 0.05 mg/ml
+0.3
-0.1
+0.3
+0.3
-0.0
carbon source
acetate (C)
-0.2
+0.5
+0.2
-0.0
+0.3
carbon source
succinate (C)
-0.1
+0.1
+0.2
+0.3
+0.4
nitrogen source
L-Arginine (N)
+0.4
+0.7
-0.6
+0.3
+0.2
carbon source
D-Mannose (C)
-0.1
+0.2
+0.1
+0.5
+0.3
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